Cysmotif Searcher Pipeline for Antimicrobial Peptide Identification in Plant Transcriptomes

Antimicrobial peptide repertoire of Thitarodes armoricanu s, a host species of Ophiocordyceps sinensis , predicted based on de novo transcriptome sequencing and analysis

(2017) Min Wang et al.   INFECTION GENETICS AND EVOLUTION

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

(2017) Runxuan Zhang et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Profiling and In Silico Analysis of the Antimicrobial Peptides of the Grasshopper Oxya chinensis sinuosa

(2016) In-Woo Kim et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is shaped by strong epistatic interactions

(2016) Nicholas Jochumsen et al.   Nature Communications

A novel antifungal peptide from leaves of the weed Stellaria media L

(2015) Eugene A. Rogozhin et al.   BIOCHIMIE

Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencing

(2015) Shishir K. Gupta et al.   BMC GENOMICS

CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides: Table 1.

(2015) Faiza Hanif Waghu et al.   NUCLEIC ACIDS RESEARCH

Prediction of Leymus arenarius (L.) antimicrobial peptides based on de novo transcriptome assembly

(2015) Anna A. Slavokhotova et al.   PLANT MOLECULAR BIOLOGY

Novel proline-hydroxyproline glycopeptides from the dandelion (Taraxacum officinale Wigg.) flowers: de novo sequencing and biological activity

(2015) Alexandra A. Astafieva et al.   PLANT SCIENCE

Novel mode of action of plant defense peptides - hevein-like antimicrobial peptides from wheat inhibit fungal metalloproteases

(2014) Anna A. Slavokhotova et al.   FEBS Journal

Data access for the 1,000 Plants (1KP) project

(2014) Naim Matasci et al.   GigaScience

Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application)

(2013) Peng Zhou et al.   BMC BIOINFORMATICS

Genes encoding 4-Cys antimicrobial peptides in wheatTriticum kiharaeDorof. et Migush.: multimodular structural organization, instraspecific variability, distribution and role in defence

(2013) Lyubov L. Utkina et al.   FEBS Journal

Antimicrobial Peptides Design by Evolutionary Multiobjective Optimization

(2013) Giuseppe Maccari et al.   PLoS Computational Biology

Transcriptome analysis of carnation (Dianthus caryophyllus L.) based on next-generation sequencing technology

(2012) Koji Tanase et al.   BMC GENOMICS

CS-AMPPred: An Updated SVM Model for Antimicrobial Activity Prediction in Cysteine-Stabilized Peptides

(2012) William F. Porto et al.   PLoS One

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

Antimicrobial peptides: key components of the innate immune system

(2011) Mukesh Pasupuleti et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

PhytAMP: a database dedicated to antimicrobial plant peptides

(2008) R. Hammami et al.   NUCLEIC ACIDS RESEARCH

Anti-Fungal Innate Immunity in C. elegans Is Enhanced by Evolutionary Diversification of Antimicrobial Peptides

(2008) Nathalie Pujol et al.   PLoS Pathogens