SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites

MDD–SOH: exploiting maximal dependence decomposition to identifyS-sulfenylation sites with substrate motifs

(2015) Van-Minh Bui et al.   BIOINFORMATICS

Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities

(2015) Van-Nui Nguyen et al.   BMC BIOINFORMATICS

dbGSH: a database of S-glutathionylation

(2014) Yi-Ju Chen et al.   BIOINFORMATICS

dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation

(2014) Yi-Ju Chen et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

(2014) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

Site-specific mapping and quantification of protein S-sulphenylation in cells

(2014) Jing Yang et al.   Nature Communications

Single-Stranded DNA as a Cleavable Linker for Bioorthogonal Click Chemistry-Based Proteomics

(2013) Tianqing Zheng et al.   BIOCONJUGATE CHEMISTRY

An Isotopically Tagged Azobenzene-Based Cleavable Linker for Quantitative Proteomics

(2013) Yu Qian et al.   CHEMBIOCHEM

Chemical approaches to detect and analyze protein sulfenic acids

(2013) Cristina M. Furdui et al.   MASS SPECTROMETRY REVIEWS

A chemoproteomic platform to quantitatively map targets of lipid-derived electrophiles

(2013) Chu Wang et al.   NATURE METHODS

dbSNO: a database of cysteine S-nitrosylation

(2012) Tzong-Yi Lee et al.   BIOINFORMATICS

RedoxDB--a curated database for experimentally verified protein oxidative modification

(2012) M.-a. Sun et al.   BIOINFORMATICS

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications

(2012) Cheng-Tsung Lu et al.   NUCLEIC ACIDS RESEARCH

Nitric Oxide and Cancer: The Emerging Role of S-Nitrosylation

(2011) E. Aranda et al.   CURRENT MOLECULAR MEDICINE

Protein sulfenic acid formation: From cellular damage to redox regulation

(2011) Goedele Roos et al.   FREE RADICAL BIOLOGY AND MEDICINE

Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites

(2011) Cheng-Tsung Lu et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Incorporating Distant Sequence Features and Radial Basis Function Networks to Identify Ubiquitin Conjugation Sites

(2011) Tzong-Yi Lee et al.   PLoS One

SNOSite: Exploiting Maximal Dependence Decomposition to Identify Cysteine S-Nitrosylation with Substrate Site Specificity

(2011) Tzong-Yi Lee et al.   PLoS One

Incorporating Evolutionary Information and Functional Domains for Identifying RNA Splicing Factors in Humans

(2011) Justin Bo-Kai Hsu et al.   PLoS One

Isoform-specific regulation of Akt by PDGF-induced reactive oxygen species

(2011) R. Wani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemical ‘omics’ approaches for understanding protein cysteine oxidation in biology

(2010) Stephen E Leonard et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Cleavable Biotin Probes for Labeling of Biomolecules via Azide−Alkyne Cycloaddition

(2010) Janek Szychowski et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Quantitative reactivity profiling predicts functional cysteines in proteomes

(2010) Eranthie Weerapana et al.   NATURE

RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans

(2010) Tzong-Yi Lee et al.   NUCLEIC ACIDS RESEARCH

Mining the Thiol Proteome for Sulfenic Acid Modifications Reveals New Targets for Oxidation in Cells

(2009) Stephen E. Leonard et al.   ACS Chemical Biology

Incorporating support vector machine for identifying protein tyrosine sulfation sites

(2009) Wen-Chi Chang et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Incorporating structural characteristics for identification of protein methylation sites

(2009) Dray-Ming Shien et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Discovering mechanisms of signaling-mediated cysteine oxidation

(2008) Leslie B Poole et al.   CURRENT OPINION IN CHEMICAL BIOLOGY