Plasmid-mediated catabolism for the removal of xenobiotics from the environment

Recent Advanced Technologies for the Characterization of Xenobiotic-Degrading Microorganisms and Microbial Communities

(2021) Sandhya Mishra et al.   Frontiers in Bioengineering and Biotechnology

Conjugal transfer of catabolic plasmids by damaged bacterial cells: Rescuing genes for pesticide biodegradation

(2021) Boris Parra et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Characterization of the role of esterases in the biodegradation of organophosphate, carbamate, and pyrethroid pesticides

(2021) Pankaj Bhatt et al.   JOURNAL OF HAZARDOUS MATERIALS

An operon consisting of a P-type ATPase gene and a transcriptional regulator gene responsible for cadmium resistances in Bacillus vietamensis 151–6 and Bacillus marisflavi 151–25

(2020) Xiaoxia Yu et al.   BMC MICROBIOLOGY

Antibiotic degradation by commensal microbes shields pathogens

(2020) Mergim Gjonbalaj et al.   INFECTION AND IMMUNITY

Bioremediation of co-contaminated soil with heavy metals and pesticides: influence factors, mechanisms and evaluation methods

(2020) Hanyan Zhang et al.   CHEMICAL ENGINEERING JOURNAL

Preservatives accelerate the horizontal transfer of plasmid-mediated antimicrobial resistance genes via differential mechanisms

(2020) Tianyu Cen et al.   ENVIRONMENT INTERNATIONAL

Novel Pathway for Chloramphenicol Catabolism in the Activated Sludge Bacterial Isolate Sphingobium sp. CAP-1

(2020) Xiaodan Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Whole genome sequence analysis of Cupriavidus campinensis S14E4C, a heavy metal resistant bacterium

(2020) Gorkhmaz Abbaszade et al.   MOLECULAR BIOLOGY REPORTS

H-NS Family Proteins Drastically Change Their Targets in Response to the Horizontal Transfer of the Catabolic Plasmid pCAR1

(2020) Taisuke Nakamura et al.   Frontiers in Microbiology

Tetracycline degradation by Klebsiella sp. strain TR5: Proposed degradation pathway and possible genes involved

(2020) Zhifeng Yin et al.   CHEMOSPHERE

Plasmid-Mediated Biodegradation of Chlorpyrifos and Analysis of Its Metabolic By-Products

(2020) Elizabeth M. John et al.   CURRENT MICROBIOLOGY

A subcellular level study of copper speciation reveals the synergistic mechanism of microbial cells and EPS involved in copper binding in bacterial biofilms

(2020) Huirong Lin et al.   ENVIRONMENTAL POLLUTION

Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids

(2020) Santiago Redondo-Salvo et al.   Nature Communications

The Naphthalene Catabolic Genes of Pseudomonas putida BS3701: Additional Regulatory Control

(2020) Irina Pozdnyakova-Filatova et al.   Frontiers in Microbiology

Effects of Mercury II on Cupriavidus metallidurans Strain MSR33 during Mercury Bioremediation under Aerobic and Anaerobic Conditions

(2020) Guillermo Bravo et al.   Processes

Degradation of Acephate and Its Intermediate Methamidophos: Mechanisms and Biochemical Pathways

(2020) Ziqiu Lin et al.   Frontiers in Microbiology

Bacilli-Mediated Degradation of Xenobiotic Compounds and Heavy Metals

(2020) Pankaj Kumar Arora   Frontiers in Bioengineering and Biotechnology

New insights into the degradation of synthetic pollutants in contaminated environments

(2020) Pankaj Bhatt et al.   CHEMOSPHERE

Antibiotics in the Soil Environment—Degradation and Their Impact on Microbial Activity and Diversity

(2019) Mariusz Cycoń et al.   Frontiers in Microbiology

Fate of Antibiotic Resistant Pseudomonas putida and Broad Host Range Plasmid in Natural Soil Microcosms

(2019) Xiao-Ting Fan et al.   Frontiers in Microbiology

Biodegradation of naphthalene, BTEX, and aliphatic hydrocarbons by Paraburkholderia aromaticivorans BN5 isolated from petroleum-contaminated soil

(2019) Yunho Lee et al.   Scientific Reports

Emerging contaminants of high concern and their enzyme-assisted biodegradation – A review

(2019) Muhammad Bilal et al.   ENVIRONMENT INTERNATIONAL

Antibiotics bioremediation: Perspectives on its ecotoxicity and resistance

(2019) Mohit Kumar et al.   ENVIRONMENT INTERNATIONAL

Genome Analysis of Carbaryl-Degrading Strain Pseudomonas putida XWY-1

(2019) Shijun Zhu et al.   CURRENT MICROBIOLOGY

Molecular Mechanism of N,N-Dimethylformamide Degradation in Methylobacterium sp. Strain DM1

(2019) Xinyu Lu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The rise and spread of mcr plasmid-mediated polymyxin resistance

(2019) Sue C. Nang et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Plasmids associated with heavy metal resistance and herbicide degradation potential in bacterial isolates obtained from two Brazilian regions

(2019) Jéssica Aparecida Silva Moretto et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Exogenous 24-epibrassinolide enhanced benzene detoxification in Chlorophytum comosum via overexpression and conjugation by glutathione

(2019) Arnon Setsungnern et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Prevalence of Antibiotic and Heavy Metal Resistance Determinants and Virulence-Related Genetic Elements in Plasmids of Staphylococcus aureus

(2019) Michal Bukowski et al.   Frontiers in Microbiology

The CYPome of the model xenobiotic-biotransforming fungus Cunninghamella elegans

(2019) William Palmer-Brown et al.   Scientific Reports

Variability in Assembly of Degradation Operons for Naphthalene and its derivative, Carbaryl, Suggests Mobilization through Horizontal Gene Transfer

(2019) Phale et al.   Genes

Genomic Analysis of γ-Hexachlorocyclohexane-Degrading Sphingopyxis lindanitolerans WS5A3p Strain in the Context of the Pangenome of Sphingopyxis

(2019) Kaminski et al.   Genes

Conferring the Metabolic Self-Sufficiency of the CAM Plasmid of Pseudomonas putida ATCC 17453: The Key Role of Putidaredoxin Reductase

(2019) Andrew Willetts   Microorganisms

Field study of chlorinated aliphatic hydrocarbon degradation in contaminated groundwater via micron zero-valent iron coupled with biostimulation

(2019) Naijin Wu et al.   CHEMICAL ENGINEERING JOURNAL

Assembly of an atrazine catabolic operon and its introduction to Gram-negative hosts for robust and stable degradation of triazine herbicides

(2019) Alfredo Lazarini-Martínez et al.   FEMS MICROBIOLOGY LETTERS

Aerobic biodegradation of 2,3- and 3,4-dichloronitrobenzene

(2019) Mallory L. Palatucci et al.   JOURNAL OF HAZARDOUS MATERIALS

Phenol biodegradation by Acinetobacter radioresistens APH1 and its application in soil bioremediation

(2019) Yifan Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Regeneration of textile wastewater deteriorated microbial diversity of soil microcosm through bioaugmentation

(2019) Swapnil M. Patil et al.   CHEMICAL ENGINEERING JOURNAL

Plasmid‐chromosome cross‐talks

(2019) Ludovic Vial et al.   ENVIRONMENTAL MICROBIOLOGY

pSTM6-275, a Conjugative IncHI2 Plasmid of Salmonella enterica That Confers Antibiotic and Heavy-Metal Resistance under Changing Physiological Conditions

(2018) Helen Billman-Jacobe et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

CrpP Is a Novel Ciprofloxacin-Modifying Enzyme Encoded by the Pseudomonas aeruginosa pUM505 Plasmid

(2018) Víctor M. Chávez-Jacobo et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Plasmid persistence: costs, benefits, and the plasmid paradox

(2018) Amanda C. Carroll et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Biotransformation of cadmium-sulfamethazine combined pollutant in aqueous environments: Phanerochaete chrysosporium bring cautious optimism

(2018) Xueying Guo et al.   CHEMICAL ENGINEERING JOURNAL

Microbial degradation of N,N-dimethylformamide by Paracoccus sp. strain DMF-3 from activated sludge

(2018) Xu Zhou et al.   CHEMICAL ENGINEERING JOURNAL

Enantioselective biodegradation of the pyrethroid (±)-lambda-cyhalothrin by marine-derived fungi

(2018) Willian G. Birolli et al.   CHEMOSPHERE

Genome Analysis of Naphthalene-Degrading Pseudomonas sp. AS1 Harboring the Megaplasmid pAS1

(2018) Jisun Kim et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Pesticide degrading natural multidrug resistance bacterial flora

(2018) Kirubakaran Rangasamy et al.   MICROBIAL PATHOGENESIS

Divalent cations increase the conjugation efficiency of the incompatibility P-7 group plasmid pCAR1 among different Pseudomonas hosts

(2018) Ayako Sakuda et al.   MICROBIOLOGY-SGM

Shared strategies for β-lactam catabolism in the soil microbiome

(2018) Terence S. Crofts et al.   Nature Chemical Biology

Purification, characterization, and gene cloning of an Aspergillus fumigatus polyhydroxybutyrate depolymerase used for degradation of polyhydroxybutyrate, polyethylene succinate, and polybutylene succinate

(2018) Hsin-Wei Jung et al.   POLYMER DEGRADATION AND STABILITY

On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2

(2018) Thomas Heine et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The interplay of EIIANtr with C-source regulation of the Pu promoter of Pseudomonas putida mt-2

(2018) Danilo Pérez-Pantoja et al.   ENVIRONMENTAL MICROBIOLOGY

Targeted metagenomics demonstrates the ecological role of IS1071 in bacterial community adaptation to pesticide degradation

(2018) Vincent Dunon et al.   ENVIRONMENTAL MICROBIOLOGY

Complete genome sequencing and analysis of endophytic Sphingomonas sp. LK11 and its potential in plant growth

(2018) Sajjad Asaf et al.   3 Biotech

Inhibiting conjugation as a tool in the fight against antibiotic resistance

(2018) Fabrice E. Graf et al.   DRUG DEVELOPMENT RESEARCH

Environmentally-related contaminants of high concern: Potential sources and analytical modalities for detection, quantification, and treatment

(2018) Tahir Rasheed et al.   ENVIRONMENT INTERNATIONAL

Sphingopyxis lindanitolerans sp. nov. strain WS5A3pT enriched from a pesticide disposal site

(2018) Michal A. Kaminski et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

(2018) Tiago F Jesus et al.   NUCLEIC ACIDS RESEARCH

Multiple Hfq-Crc target sites are required to impose catabolite repression on (methyl)phenol metabolism in Pseudomonas putida CF600

(2017) Lisa Wirebrand et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Organization of Sphingobium indicum B90A: An Archetypal Hexachlorocyclohexane (HCH) Degrading Genotype

(2017) Helianthous Verma et al.   Genome Biology and Evolution

Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH

(2017) Tue Kjærgaard Nielsen et al.   Genome Biology and Evolution

Isolation and Characterization of 2,4-D Butyl Ester Degrading Acinetobacter sp. ZX02 from a Chinese Ginger Cultivated Soil

(2017) Lin Xiao et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Complete genome sequence of Novosphingobium resinovorum SA1, a versatile xenobiotic-degrading bacterium capable of utilizing sulfanilic acid

(2017) Botond Hegedűs et al.   JOURNAL OF BIOTECHNOLOGY

Plasmid-Mediated Bioaugmentation for the Bioremediation of Contaminated Soils

(2017) Carlos Garbisu et al.   Frontiers in Microbiology

The XylS/Pm regulator/promoter system and its use in fundamental studies of bacterial gene expression, recombinant protein production and metabolic engineering

(2017) Agnieszka Gawin et al.   Microbial Biotechnology

A New Catabolic Plasmid in Xanthobacter andStarkeyaspp. from a 1,2-Dichloroethane-Contaminated Site

(2016) Jacob E. Munro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Construction, properties, and application of the pCB5 plasmid, a novel conjugative shuttle vector with a Cupriavidus basilensis origin of replication

(2016) Sheng Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparisons of the transferability of plasmids pCAR1, pB10, R388, and NAH7 amongPseudomonas putidaat different cell densities

(2016) Kosuke Yanagida et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Antibiotic resistance and plasmid profiling of Vibrio spp. in tropical waters of Peninsular Malaysia

(2016) K. G. You et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Characterization of a unique copper resistance gene cluster in Xanthomonas campestris pv. campestris isolated in Trinidad, West Indies

(2016) Franklin Behlau et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

A large conjugative Acinetobacter baumannii plasmid carrying the sul2 sulphonamide and strAB streptomycin resistance genes

(2016) Mohammad Hamidian et al.   PLASMID

Low-Concentration Ciprofloxacin Selects Plasmid-Mediated Quinolone Resistance Encoding Genes and Affects Bacterial Taxa in Soil Containing Manure

(2016) Ting Huang et al.   Frontiers in Microbiology

Biodegradation of DDT by Stenotrophomonas sp. DDT-1: Characterization and genome functional analysis

(2016) Xiong Pan et al.   Scientific Reports

Genomics of high molecular weight plasmids isolated from an on-farm biopurification system

(2016) María C. Martini et al.   Scientific Reports

s-triazine degrading bacterial isolate Arthrobacter sp. AK-YN10, a candidate for bioaugmentation of atrazine contaminated soil

(2015) Sneha Sagarkar et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Isolation of oxygenase genes for indigo-forming activity from an artificially polluted soil metagenome by functional screening using Pseudomonas putida strains as hosts

(2015) Hirofumi Nagayama et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Engineering Pseudomonas putida KT2440 for simultaneous degradation of organophosphates and pyrethroids and its application in bioremediation of soil

(2015) Zhenqiang Zuo et al.   BIODEGRADATION

Isolation and characterization of Bradyrhizobium sp. SR1 degrading two β-triketone herbicides

(2015) Sana Romdhane et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Bioaugmentation of DDT-contaminated soil by dissemination of the catabolic plasmid pDOD

(2015) Chunming Gao et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Characterization of a collection of plasmid-containing bacteria isolated from an on-farm biopurification system used for pesticide removal

(2015) María Carla Martini et al.   PLASMID

Nucleoid-associated proteins encoded on plasmids: Occurrence and mode of function

(2015) Masaki Shintani et al.   PLASMID

Preface to the proceedings of Halophiles 2013

(2015) R. Thane Papke   Frontiers in Microbiology

Complete sequencing of Novosphingobium sp. PP1Y reveals a biotechnologically meaningful metabolic pattern

(2014) Valeria D’Argenio et al.   BMC GENOMICS

Abundance and diversity of functional genes involved in the degradation of aromatic hydrocarbons in Antarctic soils and sediments around Syowa Station

(2014) C. Muangchinda et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

A 2,4-dichlorophenoxyacetic acid degradation plasmid pM7012 discloses distribution of an unclassified megaplasmid group across bacterial species

(2014) Y. Sakai et al.   MICROBIOLOGY-SGM

Proteomic Characterization of Plasmid pLA1 for Biodegradation of Polycyclic Aromatic Hydrocarbons in the Marine Bacterium, Novosphingobium pentaromativorans US6-1

(2014) Sung Ho Yun et al.   PLoS One

Pesticide relevance and their microbial degradation: a-state-of-art

(2014) Jay Prakash Verma et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Bacterial polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenases in the sediments from the Pearl River estuary, China

(2013) Peng Wu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Molecular basis of active copper resistance mechanisms in Gram-negative bacteria

(2013) Kinga Bondarczuk et al.   CELL BIOLOGY AND TOXICOLOGY

Analysis of the performance and criteria for rational design of a sequencing batch reactor for xenobiotic removal

(2013) M. Cristina Annesini et al.   CHEMICAL ENGINEERING JOURNAL

Plasmid profile and curing analysis of Pseudomonas aeruginosa as metal resistant

(2013) C. Edward Raja et al.   International Journal of Environmental Science and Technology

Structural and functional genomics of plasmid pSinA of Sinorhizobium sp. M14 encoding genes for the arsenite oxidation and arsenic resistance

(2013) Lukasz Drewniak et al.   JOURNAL OF BIOTECHNOLOGY

Overcoming Resistance to β-Lactam Antibiotics

(2013) Roberta J. Worthington et al.   JOURNAL OF ORGANIC CHEMISTRY

Plasmid-mediated bioaugmentation of sequencing batch reactors for enhancement of 2,4-dichlorophenoxyacetic acid removal in wastewater using plasmid pJP4

(2012) Hirofumi Tsutsui et al.   BIODEGRADATION

Plasmid-mediated bioaugmentation for the degradation of chlorpyrifos in soil

(2012) Qun Zhang et al.   JOURNAL OF HAZARDOUS MATERIALS

Multiple Mechanisms Contribute to Lateral Transfer of an Organophosphate Degradation ( opd ) Island in Sphingobium fuliginis ATCC 27551

(2012) Emmanuel Vijay Paul Pandeeti et al.   G3-Genes Genomes Genetics

Genetic bioaugmentation as an effective method for in situ bioremediation

(2012) Kaoru Ikuma et al.   Bioengineered

Impacts of gene bioaugmentation with pJP4-harboring bacteria of 2,4-D-contaminated soil slurry on the indigenous microbial community

(2011) Daisuke Inoue et al.   BIODEGRADATION

Biodegradation of a mixture of 2,4-dichlorophenoxyacetic acid and multiple chlorophenols by aerobic granules cultivated through plasmid pJP4 mediated bioaugmentation

(2011) Jing-yun Ma et al.   CHEMICAL ENGINEERING JOURNAL

Role of plasmid in diesel oil degradation by yeast species isolated from petroleum hydrocarbon-contaminated soil

(2011) Preethy Chandran et al.   ENVIRONMENTAL TECHNOLOGY

De Novo Sequencing and Assembly of the Whole Genome of Novosphingobium sp. Strain PP1Y

(2011) V. D'Argenio et al.   JOURNAL OF BACTERIOLOGY

Within-Genome Evolution of REPINs: a New Family of Miniature Mobile DNA in Bacteria

(2011) Frederic Bertels et al.   PLoS Genetics

High Stability and Fast Recovery of Expression of the TOL Plasmid-Carried Toluene Catabolism Genes of Pseudomonas putida mt-2 under Conditions of Oxygen Limitation and Oscillation

(2010) P. M. Martinez-Lavanchy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sphingobium sp. HV3 degrades both herbicides and polyaromatic hydrocarbons using ortho- and meta-pathways with differential expression shown by RT-PCR

(2010) Timo P. Sipilä et al.   BIODEGRADATION

Effect of carbon source addition on toluene biodegradation by an Escherichia coli DH5α transconjugant harboring the TOL plasmid

(2010) Kaoru Ikuma et al.   BIOTECHNOLOGY AND BIOENGINEERING

Complete Genome Sequence of the Representative  -Hexachlorocyclohexane-Degrading Bacterium Sphingobium japonicum UT26

(2010) Y. Nagata et al.   JOURNAL OF BACTERIOLOGY

Functional and Expression Analyses of the cop Operon, Required for Copper Resistance in Agrobacterium tumefaciens

(2009) S. Nawapan et al.   JOURNAL OF BACTERIOLOGY

Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosome

(2009) M. Kunze et al.   MICROBIOLOGY-SGM

Bacterial metabolism of polycyclic aromatic hydrocarbons: strategies for bioremediation

(2008) Archana Chauhan et al.   INDIAN JOURNAL OF MICROBIOLOGY

Bacterial degradation of phthalate isomers and their esters

(2008) C. Vamsee-Krishna et al.   INDIAN JOURNAL OF MICROBIOLOGY