Article
Biochemical Research Methods
Juhana I. Kammonen, Olli-Pekka Smolander, Timo Sipila, Kirk Overmyer, Petri Auvinen, Lars Paulin
ANALYTICAL BIOCHEMISTRY
(2015)
Article
Biochemistry & Molecular Biology
Shinjini Mukherjee, Timo Sipila, Pertti Pulkkinen, Kim Yrjala
Article
Genetics & Heredity
Jarkko Salojarvi, Olli-Pekka Smolander, Kaisa Nieminen, Sitaram Rajaraman, Omid Safronov, Pezhman Safdari, Airi Lamminmaki, Juha Immanen, Tianying Lan, Jaakko Tanskanen, Pasi Rastas, Ali Amiryousefi, Balamuralikrishna Jayaprakash, Juhana I. Kammonen, Risto Hagqvist, Gugan Eswaran, Viivi Helena Ahonen, Juan Alonso Serra, Fred O. Asiegbu, Juan de Dios Barajas-Lopez, Daniel Blande, Olga Blokhina, Tiina Blomster, Suvi Broholm, Mikael Brosche, Fuqiang Cui, Chris Dardick, Sanna E. Ehonen, Paula Elomaa, Sacha Escamez, Kurt V. Fagerstedt, Hiroaki Fujii, Adrien Gauthier, Peter J. Gollan, Pauliina Halimaa, Pekka I. Heino, Kristiina Himanen, Courtney Hollender, Saijaliisa Kangasjarvi, Leila Kauppinen, Colin T. Kelleher, Sari Kontunen-Soppela, J. Patrik Koskinen, Andriy Kovalchuk, Sirpa O. Karenlampi, Anna K. Karkonen, Kean-Jin Lim, Johanna Leppala, Lee Macpherson, Juha Mikola, Katriina Mouhu, Ari Pekka Mahonen, Ulo Niinemets, Elina Oksanen, Kirk Overmyer, E. Tapio Palva, Leila Pazouki, Ville Pennanen, Tuula Puhakainen, Peter Poczai, Boy J. H. M. Possen, Matleena Punkkinen, Moona M. Rahikainen, Matti Rousi, Raili Ruonala, Christiaan van der Schoot, Alexey Shapiguzov, Maija Sierla, Timo P. Sipila, Suvi Sutela, Teemu H. Teeri, Arja I. Tervahauta, Aleksia Vaattovaara, Jorma Vahala, Lidia Vetchinnikova, Annikki Welling, Michael Wrzaczek, Enjun Xu, Lars G. Paulin, Alan H. Schulman, Martin Lascoux, Victor A. Albert, Petri Auvinen, Yka Helariutta, Jaakko Kangasjarvi
Article
Biotechnology & Applied Microbiology
Timo P. Sipila, Kim Yrjala, Laura Alakukku, Ansa Palojarvi
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2012)
Article
Environmental Sciences
Kim Yrjala, Anna-Kaisa Keskinen, Marja-Leena Akerman, Carola Fortelius, Timo P. Sipila
ENVIRONMENTAL POLLUTION
(2010)
Article
Soil Science
Shinjini Mukherjee, Mirja Heinonen, Magali Dequvire, Timo Sipila, Pertti Pulkkinen, Kim Yrjala
SOIL BIOLOGY & BIOCHEMISTRY
(2013)
Article
Multidisciplinary Sciences
Kai Wang, Timo P. Sipila, Kirk Overmyer
SCIENTIFIC REPORTS
(2016)
Article
Multidisciplinary Sciences
Rubina Tabassum, Joel T. Ramo, Pietari Ripatti, Jukka T. Koskela, Mitja Kurki, Juha Karjalainen, Priit Palta, Shabbeer Hassan, Javier Nunez-Fontarnau, Tuomo T. J. Kiiskinen, Sanni Soderlund, Niina Matikainen, Mathias J. Gerl, Michal A. Surma, Christian Klose, Nathan O. Stitziel, Hannele Laivuori, Aki S. Havulinna, Susan K. Service, Veikko Salomaa, Matti Pirinen, Matti Jauhiainen, Mark J. Daly, Nelson B. Freimer, Aarno Palotie, Marja-Riitta Taskinen, Kai Simons, Samuli Ripatti, Anu Jalanko, Jaakko Kaprio, Kati Donner, Mari Kaunisto, Nina Mars, Alexander Dada, Anastasia Shcherban, Andrea Ganna, Arto Lehisto, Elina Kilpelainen, Georg Brein, Ghazal Awaisa, Jarmo Harju, Kalle Parr, Pietro Della Briotta Parolo, Risto Kajanne, Susanna Lemmela, Timo P. Sipila, Tuomas Sipila, Ulrike Lyhs, Vincent Llorens, Teemu Niiranen, Kati Kristiansson, Lotta Mannikko, Manuel Gonzalez Jimenez, Markus Perola, Regis Wong, Terhi Kilpi, Tero Hiekkalinna, Elina Jarvensivu, Essi Kaiharju, Hannele Mattsson, Markku Laukkanen, Paivi Laiho, Sini Lahteenmaki, Tuuli Sistonen, Sirpa Soini, Adam Ziemann, Anne Lehtonen, Apinya Lertratanakul, Bob Georgantas, Bridget Riley-Gillis, Danjuma Quarless, Fedik Rahimov, Graham Heap, Howard Jacob, Jeffrey Waring, Justin Wade Davis, Nizar Smaoui, Relja Popovic, Sahar Esmaeeli, Jeff Waring, Athena Matakidou, Ben Challis, David Close, Slave Petrovski, Antti Karlsson, Johanna Schleutker, Kari Pulkki, Petri Virolainen, Lila Kallio, Arto Mannermaa, Sami Heikkinen, Veli-Matti Kosma, Chia-Yen Chen, Heiko Runz, Jimmy Liu, Paola Bronson, Sally John, Sanni Landenpera, Susan Eaton, Wei Zhou, Minna Hendolin, Outi Tuovila, Raimo Pakkanen, Joseph Maranville, Keith Usiskin, Marla Hochfeld, Robert Plenge, Robert Yang, Shameek Biswas, Steven Greenberg, Eija Laakkonen, Juha Kononen, Juha Paloneva, Urho Kujala, Teijo Kuopio, Jari Laukkanen, Eeva Kangasniemi, Kimmo Savinainen, Reijo Laaksonen, Mikko Arvas, Jarmo Ritari, Jukka Partanen, Kati Hyvarinen, Tiina Wahlfors, Andrew Peterson, Danny Oh, Diana Chang, Edmond Teng, Erich Strauss, Geoff Kerchner, Hao Chen, Hubert Chen, Jennifer Schutzman, John Michon, Julie Hunkapiller, Mark McCarthy, Natalie Bowers, Tim Lu, Tushar Bhangale, David Pulford, Dawn Waterworth, Diptee Kulkarni, Fanli Xu, Jo Betts, Jorge Esparza Gordillo, Joshua Hoffman, Kirsi Auro, Linda McCarthy, Soumitra Ghosh, Meg Ehm, Kimmo Pitkanen, Tomi Makela, Anu Loukola, Heikki Joensuu, Juha Sinisalo, Kari Eklund, Lauri Aaltonen, Martti Farkkila, Olli Carpen, Paula Kauppi, Pentti Tienari, Terhi Ollila, Tiinamaija Tuomi, Tuomo Meretoja, Anne Pitkaranta, Joni Turunen, Katariina Hannula-Jouppi, Sampsa Pikkarainen, Sanna Seitsonen, Miika Koskinen, Antti Palomaki, Juha Rinne, Kaj Metsarinne, Klaus Elenius, Laura Pirila, Leena Koulu, Markku Voutilainen, Markus Juonala, Sirkku Peltonen, Vesa Aaltonen, Andrey Loboda, Anna Podgornaia, Aparna Chhibber, Audrey Chu, Caroline Fox, Dorothee Diogo, Emily Holzinger, John Eicher, Padhraig Gormley, Vinay Mehta, Xulong Wang, Johannes Kettunen, Katri Pylkas, Marita Kalaoja, Minna Karjalainen, Reetta Hinttala, Riitta Kaarteenaho, Seppo Vainio, Tuomo Mantere, Anne Remes, Johanna Huhtakangas, Juhani Junttila, Kaisa Tasanen, Laura Huilaja, Marja Luodonpaa, Nina Hautala, Peeter Karihtala, Saila Kauppila, Terttu Harju, Timo Blomster, Hilkka Soininen, Ilkka Harvima, Jussi Pihlajamaki, Kai Kaarniranta, Margit Pelkonen, Markku Laakso, Mikko Hiltunen, Mikko Kiviniemi, Oili Kaipiainen-Seppanen, Paivi Auvinen, Reetta Kalviainen, Valtteri Julkunen, Anders Malarstig, Asa Hedman, Catherine Marshal, Christopher Whelan, Heli Lehtonen, Jaakko Parkkinen, Kari Linden, Kirsi Kalpala, Melissa Miller, Nan Bing, Stefan McDonough, Xing Chen, Xinli Hu, Ying Wu, Annika Auranen, Airi Jussila, Hannele Uusitalo-Jarvinen, Hannu Kankaanranta, Hannu Uusitalo, Jukka Peltola, Mika Kahonen, Pia Isomaki, Tarja Laitinen, Teea Salmi, Anthony Muslin, Clarence Wang, Clement Chatelain, Ethan Xu, Franck Auge, Kathy Call, Kathy Klinger, Marika Crohns, Matthias Gossel, Kimmo Palin, Manuel Rivas, Harri Siirtola, Javier Gracia Tabuenca
NATURE COMMUNICATIONS
(2019)
Article
Microbiology
Margaretta Christita, Timo P. Sipila, Agate Auzane, Kirk Overmyer
Summary: The phyllosphere is an important habitat for microorganisms and serves as a reservoir for organisms that affect plant health. This study found that Taphrina betulina, the causal agent of birch witches' broom disease, is widespread on birch trees and exhibits genetic and phenotypic diversity among different trees.
ENVIRONMENTAL MICROBIOLOGY
(2022)
Article
Multidisciplinary Sciences
Mitja Kurki, Juha Karjalainen, Priit Palta, Timo P. Sipila, Kati Kristiansson, Kati M. Donner, Mary P. Reeve, Hannele Laivuori, Mervi Aavikko, Mari A. Kaunisto, Anu Loukola, Elisa Lahtela, Hannele Mattsson, Paivi Laiho, Pietro Della Briotta Parolo, Arto A. Lehisto, Masahiro Kanai, Nina Mars, Joel Ramo, Tuomo Kiiskinen, Henrike O. Heyne, Kumar Veerapen, Sina Rueger, Susanna Lemmela, Wei Zhou, Sanni Ruotsalainen, Kalle Parn, Tero Hiekkalinna, Sami Koskelainen, Teemu Paajanen, Vincent Llorens, Javier Gracia-Tabuenca, Harri Siirtola, Kadri Reis, Abdelrahman G. Elnahas, Benjamin Sun, Christopher N. Foley, Katriina Aalto-Setala, Kaur Alasoo, Mikko Arvas, Kirsi Auro, Shameek Biswas, Argyro Bizaki-Vallaskangas, Olli Carpen, Chia-Yen Chen, Oluwaseun A. Dada, Zhihao Ding, Margaret G. Ehm, Kari Eklund, Martti Farkkila, Hilary Finucane, Andrea Ganna, Awaisa Ghazal, Robert R. Graham, Eric M. Green, Antti Hakanen, Marco Hautalahti, Asa K. Hedman, Mikko Hiltunen, Reetta Hinttala, Iiris Hovatta, Xinli Hu, Adriana Huertas-Vazquez, Laura Huilaja, Julie Hunkapiller, Howard Jacob, Jan-Nygaard Jensen, Heikki Joensuu, Sally John, Valtteri Julkunen, Marc Jung, Juhani Junttila, Kai Kaarniranta, Mika Kahonen, Risto Kajanne, Lila Kallio, Reetta Kalviainen, Jaakko Kaprio, Nurlan Kerimov, Johannes Kettunen, Elina Kilpelainen, Terhi Kilpi, Katherine Klinger, Veli-Matti Kosma, Teijo Kuopio, Venla Kurra, Triin Laisk, Jari Laukkanen, Nathan Lawless, Aoxing Liu, Simonne Longerich, Reedik Magi, Johanna Makela, Antti Makitie, Anders Malarstig, Arto Mannermaa, Joseph Maranville, Athena Matakidou, Tuomo Meretoja, Sahar Mozaffari, Mari E. K. Niemi, Marianna Niemi, Teemu Niiranen, George Okafo, Hanna M. Ollila, Antti Palomaki, Tuula Palotie, Jukka Partanen, Dirk S. Paul, Margit Pelkonen, Rion K. Pendergrass, Slave Petrovski, Anne Pitkaranta, Adam Platt, David Pulford, Eero Punkka, Pirkko Pussinen, Neha Raghavan, Fedik Rahimov, Deepak Rajpal, Nicole A. Renaud, Bridget Riley-Gillis, Rodosthenis Rodosthenous, Elmo Saarentaus, Aino Salminen, Eveliina Salminen, Veikko Salomaa, Johanna Schleutker, Raisa Serpi, Huei-yi Shen, Richard Siegel, Kaisa Silander, Sanna Siltanen, Sirpa Soini, Hilkka Soininen, Jae Hoon Sul, Ioanna Tachmazidou, Kaisa Tasanen, Pentti Tienari, Sanna Toppila-Salmi, Taru Tukiainen, Tiinamaija Tuomi, Joni A. Turunen, Jacob C. Ulirsch, Felix Vaura, Petri Virolainen, Jeffrey Waring, Dawn Waterworth, Robert Yang, Mari Nelis, Anu Reigo, Andres Metspalu, Lili Milani, Tonu Esko, Caroline Fox, Aki S. Havulinna, Markus Perola, Samuli Ripatti, Anu Jalanko, Tarja Laitinen, Tomi P. Makela, Robert Plenge, Mark McCarthy, Heiko Runz, Mark J. Daly, Aarno Palotie
Summary: Population isolates, like those in Finland, provide valuable insights for genetic research due to the concentration of deleterious alleles in low-frequency variants. FinnGen aims to study the genome and health data of 500,000 Finnish individuals, enabling the identification of new associations and the exploration of their implications for common diseases. The study identified 30 new associations and 2,733 genome-wide significant associations, highlighting the power of bottlenecked populations in uncovering disease biology.
Proceedings Paper
Computer Science, Interdisciplinary Applications
Timo Petteri Sipila, Paavo Happola, Mart Kals, Andres Metspalu, Priit Palta, Aarno Palotie
2018 IEEE 14TH INTERNATIONAL CONFERENCE ON E-SCIENCE (E-SCIENCE 2018)
(2018)
Article
Forestry
Lu-Min Vaario, Kim Yrjala, Matti Rousi, Timo Sipila, Pertti Pulkkinen
Article
Environmental Sciences
Kim Yrjala, Giulia Mancano, Carola Fortelius, Marja-Leena Akerman, Timo P. Sipila
BOREAL ENVIRONMENT RESEARCH
(2010)
Article
Mycology
Kai Wang, Timo Sipila, Kirk Overmyer
Summary: Protomyces is a poorly studied genus of yeast-like fungi with controversial species relationships. A new species, P. arabidopsidicola sp. nov., was discovered in Arabidopsis thaliana and suggested to be distinct from other Protomyces species based on genomic, morphological, and physiological characteristics. It was also proposed that Protomyces may not be strictly associated with its previously recognized host plants.