Changes in rumen fermentation and bacterial community in lactating dairy cows with subacute rumen acidosis following rumen content transplantation

Repeated inoculation with fresh rumen fluid before or during weaning modulates the microbiota composition and co-occurrence of the rumen and colon of lambs

(2020) Shaobo Yu et al.   BMC MICROBIOLOGY

Effect of pelleted high-grain total mixed ration on rumen morphology, epithelium-associated microbiota and gene expression of proinflammatory cytokines and tight junction proteins in Hu sheep

(2020) Ehab Bo Trabi et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Gut microbiota modulation: a novel strategy for prevention and treatment of colorectal cancer

(2020) Winnie Fong et al.   ONCOGENE

Gene function adjustment for carbohydrate metabolism and enrichment of rumen microbiota with antibiotic resistance genes during subacute rumen acidosis induced by a high-grain diet in lactating dairy cows

(2020) Y.Y. Mu et al.   JOURNAL OF DAIRY SCIENCE

Integrating 16S rRNA Sequencing and LC–MS-Based Metabolomics to Evaluate the Effects of Live Yeast on Rumen Function in Beef Cattle

(2019) Ibukun Ogunade et al.   Animals

Dynamic changes in rumen fermentation and bacterial community following rumen fluid transplantation in a sheep model of rumen acidosis: implications for rumen health in ruminants

(2019) Junhua Liu et al.   FASEB JOURNAL

Assessment of rumen bacteria in dairy cows with varied milk protein yield

(2019) M.Y. Xue et al.   JOURNAL OF DAIRY SCIENCE

Microbiota-derived acetate protects against respiratory syncytial virus infection through a GPR43-type 1 interferon response

(2019) Krist Helen Antunes et al.   Nature Communications

Cecal Gut Microbiota and Metabolites Might Contribute to the Severity of Acute Myocardial Ischemia by Impacting the Intestinal Permeability, Oxidative Stress, and Energy Metabolism

(2019) Lili Sun et al.   Frontiers in Microbiology

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Cow responses and evolution of the rumen bacterial and methanogen community following a complete rumen content transfer

(2018) T. De Mulder et al.   JOURNAL OF AGRICULTURAL SCIENCE

Efficacy of Megasphaera elsdenii inoculation in subacute ruminal acidosis in cattle

(2018) Huzur Derya Arik et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Transient changes in milk production efficiency and bacterial community composition resulting from near-total exchange of ruminal contents between high- and low-efficiency Holstein cows

(2017) Paul J. Weimer et al.   JOURNAL OF DAIRY SCIENCE

Changes in Microbiota in Rumen Digesta and Feces Due to a Grain-Based Subacute Ruminal Acidosis (SARA) Challenge

(2017) Jan C. Plaizier et al.   MICROBIAL ECOLOGY

The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003

(2017) Nikola Palevich et al.   Standards in Genomic Sciences

Illumina Sequencing Approach to Characterize Thiamine Metabolism Related Bacteria and the Impacts of Thiamine Supplementation on Ruminal Microbiota in Dairy Cows Fed High-Grain Diets

(2017) Xiaohua Pan et al.   Frontiers in Microbiology

Rumen Bacteria Communities and Performances of Fattening Lambs with a Lower or Greater Subacute Ruminal Acidosis Risk

(2017) Fei Li et al.   Frontiers in Microbiology

Linking Peripartal Dynamics of Ruminal Microbiota to Dietary Changes and Production Parameters

(2017) Hooman Derakhshani et al.   Frontiers in Microbiology

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Relationship between thiamine and subacute ruminal acidosis induced by a high-grain diet in dairy cows

(2016) X.H. Pan et al.   JOURNAL OF DAIRY SCIENCE

Fecal microbiota transplantation and bacterial consortium transplantation have comparable effects on the re-establishment of mucosal barrier function in mice with intestinal dysbiosis

(2015) Ming Li et al.   Frontiers in Microbiology

Microbial biodiversity of the liquid fraction of rumen content from lactating cows

(2014) M. Sandri et al.   Animal

Murimonas intestini gen. nov., sp. nov., an acetate-producing bacterium of the family Lachnospiraceae isolated from the mouse gut

(2014) K. Klaring et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Amylase addition increases starch ruminal digestion in first-lactation cows fed high and low starch diets

(2014) P. Nozière et al.   JOURNAL OF DAIRY SCIENCE

Impact of subacute ruminal acidosis (SARA) adaptation on rumen microbiota in dairy cattle using pyrosequencing

(2013) S.Y. Mao et al.   ANAEROBE

Comparative Analysis of Microbial Profiles in Cow Rumen Fed with Different Dietary Fiber by Tagged 16S rRNA Gene Pyrosequencing

(2013) Honglada Thoetkiattikul et al.   CURRENT MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

The Fibrobacteres: an Important Phylum of Cellulose-Degrading Bacteria

(2012) Emma Ransom-Jones et al.   MICROBIAL ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Incidence, prevalence and impact of SARA in dairy herds

(2011) J.L. Kleen et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Effects of subacute ruminal acidosis challenges on fermentation and endotoxins in the rumen and hindgut of dairy cows

(2011) S. Li et al.   JOURNAL OF DAIRY SCIENCE

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic diversity and dietary association of rumen Treponema revealed using group-specific 16S rRNA gene-based analysis

(2010) Aschalew Z. Bekele et al.   FEMS MICROBIOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The large-scale organization of the bacterial network of ecological co-occurrence interactions

(2010) Shiri Freilich et al.   NUCLEIC ACIDS RESEARCH

Effects of induced subacute ruminal acidosis on milk fat content and milk fatty acid profile

(2008) F. Enjalbert et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

The monitoring, prevention and treatment of sub-acute ruminal acidosis (SARA): A review

(2008) Jörg M.D. Enemark   VETERINARY JOURNAL