Gene function adjustment for carbohydrate metabolism and enrichment of rumen microbiota with antibiotic resistance genes during subacute rumen acidosis induced by a high-grain diet in lactating dairy cows

Antibiotic Resistance Genes in the Gut Microbiota of Children with Autistic Spectrum Disorder as Possible Predictors of the Disease

(2020) Alexey S. Kovtun et al.   Microbial Drug Resistance

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

(2020) Junhua Li et al.   GigaScience

Metagenomic Analyses of Microbial and Carbohydrate-Active Enzymes in the Rumen of Holstein Cows Fed Different Forage-to-Concentrate Ratios

(2019) Lijun Wang et al.   Frontiers in Microbiology

Recent insight and future techniques to enhance rumen fermentation in dairy goats

(2019) Lovelia L. Mamuad et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Fibre digestion by rumen microbiota – a review of recent metagenomic and metatranscriptomic studies

(2019) Stephanie A Terry et al.   CANADIAN JOURNAL OF ANIMAL SCIENCE

Characterization of antibiotic resistance genes in the species of the rumen microbiota

(2019) Yasmin Neves Vieira Sabino et al.   Nature Communications

Effects of dietary energy levels on rumen bacterial community composition in Holstein heifers under the same forage to concentrate ratio condition

(2018) Yanliang Bi et al.   BMC MICROBIOLOGY

Changes in ruminal and reticular pH and bacterial communities in Holstein cattle fed a high-grain diet

(2018) Yo-Han Kim et al.   BMC Veterinary Research

Genomes of rumen bacteria encode atypical pathways for fermenting hexoses to short-chain fatty acids

(2017) Timothy J. Hackmann et al.   ENVIRONMENTAL MICROBIOLOGY

Intramammary infusion of Escherichia coli lipopolysaccharide negatively affects feed intake, chewing, and clinical variables, but some effects are stronger in cows experiencing subacute rumen acidosis

(2017) S. Aditya et al.   JOURNAL OF DAIRY SCIENCE

Changes in Microbiota in Rumen Digesta and Feces Due to a Grain-Based Subacute Ruminal Acidosis (SARA) Challenge

(2017) Jan C. Plaizier et al.   MICROBIAL ECOLOGY

Rumen methanogens and mitigation of methane emission by anti-methanogenic compounds and substances

(2017) Amlan Patra et al.   Journal of Animal Science and Biotechnology

The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

(2017) Marc D. Auffret et al.   Microbiome

Rumen microbial abundance and fermentation profile during severe subacute ruminal acidosis and its modulation by plant derived alkaloids in vitro

(2016) Elsayed Mickdam et al.   ANAEROBE

Relationship between thiamine and subacute ruminal acidosis induced by a high-grain diet in dairy cows

(2016) X.H. Pan et al.   JOURNAL OF DAIRY SCIENCE

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Effect of roughage on rumen microbiota composition in the efficient feed converter and sturdy Indian Jaffrabadi buffalo (Bubalus bubalis)

(2015) Neelam M. Nathani et al.   BMC GENOMICS

Impact of ruminal pH on enteric methane emissions1

(2015) M. Hünerberg et al.   JOURNAL OF ANIMAL SCIENCE

Longitudinal shifts in bacterial diversity and fermentation pattern in the rumen of steers grazing wheat pasture

(2014) D.W. Pitta et al.   ANAEROBE

Metatranscriptomic Analyses of Plant Cell Wall Polysaccharide Degradation by Microorganisms in the Cow Rumen

(2014) Xin Dai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of the rumen microbiome of Indian Kankrej cattle (Bos indicus) adapted to different forage diet

(2014) Vilas Patel et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

(2014) Renee M. Petri et al.   PLoS One

Impact of subacute ruminal acidosis (SARA) adaptation on rumen microbiota in dairy cattle using pyrosequencing

(2013) S.Y. Mao et al.   ANAEROBE

Comparative Analysis of Microbial Profiles in Cow Rumen Fed with Different Dietary Fiber by Tagged 16S rRNA Gene Pyrosequencing

(2013) Honglada Thoetkiattikul et al.   CURRENT MICROBIOLOGY

SPECIAL TOPICS — Mitigation of methane and nitrous oxide emissions from animal operations: I. A review of enteric methane mitigation options1

(2013) A. N. Hristov et al.   JOURNAL OF ANIMAL SCIENCE

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

The Fibrobacteres: an Important Phylum of Cellulose-Degrading Bacteria

(2012) Emma Ransom-Jones et al.   MICROBIAL ECOLOGY

Incidence, prevalence and impact of SARA in dairy herds

(2011) J.L. Kleen et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Effects of subacute ruminal acidosis challenges on fermentation and endotoxins in the rumen and hindgut of dairy cows

(2011) S. Li et al.   JOURNAL OF DAIRY SCIENCE

Beta-xylosidase activity of a GH3 glucosidase/xylosidase from yak rumen metagenome promotes the enzymatic degradation of hemicellulosic xylans

(2011) J. Zhou et al.   LETTERS IN APPLIED MICROBIOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis

(2009) E. Khafipour et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rumen Bacterial Diversity Dynamics Associated with Changing from Bermudagrass Hay to Grazed Winter Wheat Diets

(2009) Dipti W. Pitta et al.   MICROBIAL ECOLOGY

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of induced subacute ruminal acidosis on milk fat content and milk fatty acid profile

(2008) F. Enjalbert et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

The monitoring, prevention and treatment of sub-acute ruminal acidosis (SARA): A review

(2008) Jörg M.D. Enemark   VETERINARY JOURNAL

Subacute ruminal acidosis in dairy cows: The physiological causes, incidence and consequences

(2008) J.C. Plaizier et al.   VETERINARY JOURNAL