The large-scale organization of the bacterial network of ecological co-occurrence interactions

Network-based approaches for linking metabolism with environment

(2012) Sarath Janga et al.   GENOME BIOLOGY

Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species

(2010) Shiri Freilich et al.   PLoS Computational Biology

The microbial ocean from genomes to biomes

(2009) Edward F. DeLong   NATURE

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Getting in Touch with Your Friends

(2009) C. J. Marx   SCIENCE

EnvDB, a database for describing the environmental distribution of prokaryotic taxa

(2009) Miguel Pignatelli et al.   Environmental Microbiology Reports

Metabolic-network-driven analysis of bacterial ecological strategies

(2009) Shiri Freilich et al.   GENOME BIOLOGY

Microbial co-habitation and lateral gene transfer: what transposases can tell us

(2009) Sean D Hooper et al.   GENOME BIOLOGY

Microbial community of granules in expanded granular sludge bed reactor for simultaneous biological removal of sulfate, nitrate and lactate

(2008) Chuan Chen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Identification and Analysis of Co-Occurrence Networks with NetCutter

(2008) Heiko Müller et al.   PLoS One

The convergence of carbohydrate active gene repertoires in human gut microbes

(2008) C. A. Lozupone et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale reconstruction and phylogenetic analysis of metabolic environments

(2008) E. Borenstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete degradation of butyl benzyl phthalate by a defined bacterial consortium: Role of individual isolates in the assimilation pathway

(2007) Subhankar Chatterjee et al.   CHEMOSPHERE

An environmental perspective on metabolism

(2007) Thomas Handorf et al.   JOURNAL OF THEORETICAL BIOLOGY