Molecular basis of a bacterial-amphibian symbiosis revealed by comparative genomics, modeling, and functional testing

Transcriptome Analysis Reveals the Resistance Mechanism of Pseudomonas aeruginosa to Tachyplesin I

(2020) Jun Hong et al.   Infection and Drug Resistance

The skin microbiome facilitates adaptive tetrodotoxin production in poisonous newts

(2020) Patric M Vaelli et al.   eLife

Symbiotic skin bacteria as a source for sex-specific scents in frogs

(2019) Andrés E. Brunetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probiotics Modulate a Novel Amphibian Skin Defense Peptide That Is Antifungal and Facilitates Growth of Antifungal Bacteria

(2019) Douglas C. Woodhams et al.   MICROBIAL ECOLOGY

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts

(2019) Molly C. Bletz et al.   PLoS One

An integrative omics perspective for the analysis of chemical signals in ecological interactions

(2018) A. E. Brunetti et al.   CHEMICAL SOCIETY REVIEWS

Genome-based evolutionary history of Pseudomonas spp

(2018) Cedar Hesse et al.   ENVIRONMENTAL MICROBIOLOGY

Role of antimicrobial peptides in controlling symbiotic bacterial populations

(2018) P. Mergaert   NATURAL PRODUCT REPORTS

Structural insights into the signalling mechanisms of two-component systems

(2018) Françoise Jacob-Dubuisson et al.   NATURE REVIEWS MICROBIOLOGY

Host and Aquatic Environment Shape the Amphibian Skin Microbiome but Effects on Downstream Resistance to the Pathogen Batrachochytrium dendrobatidis Are Variable

(2018) Andrea J. Jani et al.   Frontiers in Microbiology

Microbiota and skin defense peptides may facilitate coexistence of two sympatric Andean frog species with a lethal pathogen

(2018) Sandra V. Flechas et al.   ISME Journal

BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis

(2018) Lorenz Christian Reimer et al.   NUCLEIC ACIDS RESEARCH

Persistence of root-colonizing Pseudomonas protegens in herbivorous insects throughout different developmental stages and dispersal to new host plants

(2018) Pascale Flury et al.   ISME Journal

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

(2018) Chirag Jain et al.   Nature Communications

Double-slit photoelectron interference in strong-field ionization of the neon dimer

(2018) Maksim Kunitski et al.   Nature Communications

Resistance to polymyxins in Gram-negative organisms

(2017) Katy Jeannot et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

TNT version 1.5, including a full implementation of phylogenetic morphometrics

(2016) Pablo A. Goloboff et al.   CLADISTICS

Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics

(2016) Pascale Flury et al.   ISME Journal

Skin bacterial diversity of Panamanian frogs is associated with host susceptibility and presence of Batrachochytrium dendrobatidis

(2016) Eria A Rebollar et al.   ISME Journal

Molecular Mechanisms of Two-Component Signal Transduction

(2016) Christopher P. Zschiedrich et al.   JOURNAL OF MOLECULAR BIOLOGY

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

(2016) G.C.P. van Zundert et al.   JOURNAL OF MOLECULAR BIOLOGY

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Bacterial strategies of resistance to antimicrobial peptides

(2016) Hwang-Soo Joo et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic distribution of symbiotic bacteria from Panamanian amphibians that inhibit growth of the lethal fungal pathogenBatrachochytrium dendrobatidis

(2015) Matthew H. Becker et al.   MOLECULAR ECOLOGY

The diversity and evolution of anuran skin peptides

(2015) Enrico König et al.   PEPTIDES

Identification and characterization of an antimicrobial peptide of Hypsiboas semilineatus (Spix, 1824) (Amphibia, Hylidae)

(2015) Lorena Nacif-Marçal et al.   TOXICON

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Amphibian skin may select for rare environmental microbes

(2014) Jenifer B Walke et al.   ISME Journal

Cnidarian-Microbe Interactions and the Origin of Innate Immunity in Metazoans

(2013) Thomas C.G. Bosch   Annual Review of Microbiology

Polymyxin Resistance ofPseudomonas aeruginosa phoQMutants Is Dependent on Additional Two-Component Regulatory Systems

(2013) Alina D. Gutu et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Characterization of AusA: A Dimodular Nonribosomal Peptide Synthetase Responsible for the Production of Aureusimine Pyrazinones

(2013) Daniel J. Wilson et al.   BIOCHEMISTRY

Reductive evolution and the loss of PDC/PAS domains from the genus Staphylococcus

(2013) Neethu Shah et al.   BMC GENOMICS

The Two-Component System CprRS Senses Cationic Peptides and Triggers Adaptive Resistance in Pseudomonas aeruginosa Independently of ParRS

(2012) Lucía Fernández et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

Pseudomonas protegens sp. nov., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin

(2011) Alban Ramette et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Attenuation of the Sensing Capabilities of PhoQ in Transition to Obligate Insect–Bacterial Association

(2011) Mauricio Henriques Pontes et al.   PLoS Genetics

Correlation of 3-Isobutyl-2-methoxypyrazine to 3-Isobutyl-2-hydroxypyrazine during Maturation of Bell Pepper (Capsicum annuum) and Wine Grapes (Vitis vinifera)

(2010) Imelda Ryona et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Biological Insights from Structures of Two-Component Proteins

(2009) Rong Gao et al.   Annual Review of Microbiology

Extracytoplasmic PAS-Like Domains Are Common in Signal Transduction Proteins

(2009) C. Chang et al.   JOURNAL OF BACTERIOLOGY

Structure and Signaling Mechanism of Per-ARNT-Sim Domains

(2009) Andreas Möglich et al.   STRUCTURE

Post-secretory events alter the peptide content of the skin secretion of Hypsiboas raniceps

(2008) Beatriz S. Magalhães et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Crystal Structure of a Functional Dimer of the PhoQ Sensor Domain

(2008) Jonah Cheung et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Hylin a1, the first cytolytic peptide isolated from the arboreal South American frog Hypsiboas albopunctatus (“spotted treefrog”)

(2008) Mariana S. Castro et al.   PEPTIDES