Delayed antiretroviral therapy in HIV-infected individuals leads to irreversible depletion of skin- and mucosa-resident memory T cells

Expansible residence decentralizes immune homeostasis

(2021) Sathi Wijeyesinghe et al.   NATURE

Human resident memory T cells exit the skin and mediate systemic Th2-driven inflammation

(2021) Johanna Strobl et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Defining T Cell Tissue Residency in Humans: Implications for HIV Pathogenesis and Vaccine Design

(2020) Barbara L. Shacklett et al.   Current HIV/AIDS Reports

Association of antiretroviral therapy with anal high-risk human papillomavirus, anal intraepithelial neoplasia, and anal cancer in people living with HIV: a systematic review and meta-analysis

(2020) Helen Kelly et al.   Lancet HIV

T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers

(2020) Prabhu S. Arunachalam et al.   NATURE MEDICINE

Host Immunity to Malassezia in Health and Disease

(2020) Florian Sparber et al.   Frontiers in Cellular and Infection Microbiology

Early precursors and molecular determinants of tissue-resident memory CD8+ T lymphocytes revealed by single-cell RNA sequencing

(2020) Nadia S. Kurd et al.   Science Immunology

Single-cell TCR sequencing reveals phenotypically diverse clonally expanded cells harboring inducible HIV proviruses during ART

(2020) Pierre Gantner et al.   Nature Communications

The Chemokine Receptor CXCR4 in Cell Proliferation and Tissue Regeneration

(2020) Marco E. Bianchi et al.   Frontiers in Immunology

Long-term skin-resident memory T cells proliferate in situ and are involved in human graft-versus-host disease

(2020) Johanna Strobl et al.   Science Translational Medicine

Origins of CD 4 + circulating and tissue‐resident memory T cells

(2019) Quynh P. Nguyen et al.   IMMUNOLOGY

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Skin‐resident memory T cells as a potential new therapeutic target in vitiligo and melanoma

(2019) Marcella Willemsen et al.   Pigment Cell & Melanoma Research

Human CD4+CD103+ cutaneous resident memory T cells are found in the circulation of healthy individuals

(2019) Maria M. Klicznik et al.   Science Immunology

Risk of Anal Cancer Following Benign Anal Disease and Anal Cancer Precursor Lesions: A Danish Nationwide Cohort Study

(2019) Mette T. Faber et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Tissue-resident memory CD8+ T cells amplify anti-tumor immunity by triggering antigen spreading through dendritic cells

(2019) Evelyn Menares et al.   Nature Communications

Resident memory T cells are a cellular reservoir for HIV in the cervical mucosa

(2019) Jon Cantero-Pérez et al.   Nature Communications

The human tissue-resident CCR5+ T cell compartment maintains protective and functional properties during inflammation

(2019) Amanda S. Woodward Davis et al.   Science Translational Medicine

Targeting the Latent Reservoir for HIV-1

(2018) Srona Sengupta et al.   IMMUNITY

Tissue-resident memory T cells in tissue homeostasis, persistent infection, and cancer surveillance

(2018) Thomas Gebhardt et al.   IMMUNOLOGICAL REVIEWS

HPV16E7-Induced Hyperplasia Promotes CXCL9/10 Expression and Induces CXCR3 + T-Cell Migration to Skin

(2018) Paula Kuo et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Local proliferation maintains a stable pool of tissue-resident memory T cells after antiviral recall responses

(2018) Simone L. Park et al.   NATURE IMMUNOLOGY

Association of antiretroviral therapy with high-risk human papillomavirus, cervical intraepithelial neoplasia, and invasive cervical cancer in women living with HIV: a systematic review and meta-analysis

(2018) Helen Kelly et al.   Lancet HIV

Tumor Resident Memory T Cells: New Players in Immune Surveillance and Therapy

(2018) Nina Dumauthioz et al.   Frontiers in Immunology

Tissue-resident memory CD8+ T cells promote melanoma–immune equilibrium in skin

(2018) Simone L. Park et al.   NATURE

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

Epigenetic and Transcriptional Regulation in the Induction, Maintenance, Heterogeneity, and Recall-Response of Effector and Memory Th2 Cells

(2018) Atsushi Onodera et al.   Frontiers in Immunology

Tissue Resident CD8 Memory T Cell Responses in Cancer and Autoimmunity

(2018) Aleksey Molodtsov et al.   Frontiers in Immunology

Prevention of human papillomavirus (HPV)-related tumors in people living with human immunodeficiency virus (HIV)

(2017) Mario Poljak et al.   Expert Review of Anti-Infective Therapy

ReadTools : A universal toolkit for handling sequence data from different sequencing platforms

(2017) Daniel Gómez-Sánchez et al.   Molecular Ecology Resources

Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection

(2017) Brenna E Kiniry et al.   Mucosal Immunology

Simultaneous epitope and transcriptome measurement in single cells

(2017) Marlon Stoeckius et al.   NATURE METHODS

Cutaneous malignancies in HIV

(2017) Aileen Y. Chang et al.   Current Opinion in HIV and AIDS

Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites

(2017) Brahma V. Kumar et al.   Cell Reports

Survival of HIV-positive patients starting antiretroviral therapy between 1996 and 2013: a collaborative analysis of cohort studies

(2017) Adam Trickey et al.   Lancet HIV

Dissecting How CD4 T Cells Are Lost During HIV Infection

(2016) Gilad Doitsh et al.   Cell Host & Microbe

Innate Lymphoid Cells Are Depleted Irreversibly during Acute HIV-1 Infection in the Absence of Viral Suppression

(2016) Henrik N. Kløverpris et al.   IMMUNITY

Liver-Resident Memory CD8 + T Cells Form a Front-Line Defense against Malaria Liver-Stage Infection

(2016) Daniel Fernandez-Ruiz et al.   IMMUNITY

Gut Mucosal Barrier Dysfunction, Microbial Dysbiosis, and Their Role in HIV-1 Disease Progression

(2016) Joseph C. Mudd et al.   JOURNAL OF INFECTIOUS DISEASES

HIV-1 Integration Landscape during Latent and Active Infection

(2015) Lillian B. Cohn et al.   CELL

Blood-Derived CD4 T Cells Naturally Resist Pyroptosis during Abortive HIV-1 Infection

(2015) Isa Muñoz-Arias et al.   Cell Host & Microbe

Local HPV Recombinant Vaccinia Boost Following Priming with an HPV DNA Vaccine Enhances Local HPV-Specific CD8+ T-cell-Mediated Tumor Control in the Genital Tract

(2015) Y.-Y. Sun et al.   CLINICAL CANCER RESEARCH

Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types

(2015) Jin Li et al.   EMBO REPORTS

CXCR3 Chemokine Receptor Enables Local CD8+ T Cell Migration for the Destruction of Virus-Infected Cells

(2015) Heather D. Hickman et al.   IMMUNITY

HIV reservoirs as obstacles and opportunities for an HIV cure

(2015) Tae-Wook Chun et al.   NATURE IMMUNOLOGY

Common clonal origin of central and resident memory T cells following skin immunization

(2015) Olivier Gaide et al.   NATURE MEDICINE

The emerging role of resident memory T cells in protective immunity and inflammatory disease

(2015) Chang Ook Park et al.   NATURE MEDICINE

Initiation of Antiretroviral Therapy in Early Asymptomatic HIV Infection

(2015)   NEW ENGLAND JOURNAL OF MEDICINE

Human skin is protected by four functionally and phenotypically discrete populations of resident and recirculating memory T cells

(2015) Rei Watanabe et al.   Science Translational Medicine

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(2014) Zuguang Gu et al.   BIOINFORMATICS

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Risk of Melanoma in People with HIV/AIDS in the Pre- and Post-HAART Eras: A Systematic Review and Meta-Analysis of Cohort Studies

(2014) Catherine M. Olsen et al.   PLoS One

Skin-resident memory CD8+ T cells trigger a state of tissue-wide pathogen alert

(2014) S. Ariotti et al.   SCIENCE

A local macrophage chemokine network sustains protective tissue-resident memory CD4 T cells

(2014) N. Iijima et al.   SCIENCE

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

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CXCR3/CCR5 pathways in metastatic melanoma patients treated with adoptive therapy and interleukin-2

(2013) D Bedognetti et al.   BRITISH JOURNAL OF CANCER

Oral human papillomavirus infection and head and neck cancers in HIV-infected individuals

(2013) Daniel C. Beachler et al.   CURRENT OPINION IN ONCOLOGY

Human CD1c+ Dendritic Cells Drive the Differentiation of CD103+ CD8+ Mucosal Effector T Cells via the Cytokine TGF-β

(2013) Chun I. Yu et al.   IMMUNITY

Mucosal immunology of HIV infection

(2013) Huanbin Xu et al.   IMMUNOLOGICAL REVIEWS

CD4+T-cell depletion in HIV infection: mechanisms of immunological failure

(2013) Afam A. Okoye et al.   IMMUNOLOGICAL REVIEWS

Immune surveillance by CD8αα+ skin-resident T cells in human herpes virus infection

(2013) Jia Zhu et al.   NATURE

Cell death by pyroptosis drives CD4 T-cell depletion in HIV-1 infection

(2013) Gilad Doitsh et al.   NATURE

The developmental pathway for CD103+CD8+ tissue-resident memory T cells of skin

(2013) Laura K Mackay et al.   NATURE IMMUNOLOGY

HIV Latency

(2013) R. F. Siliciano et al.   Cold Spring Harbor Perspectives in Medicine

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

CXCR3 in T cell function

(2011) Joanna R. Groom et al.   EXPERIMENTAL CELL RESEARCH

New insights into HIV-1-primary skin disorders

(2011) Filiberto Cedeno-Laurent et al.   Journal of the International AIDS Society

Persistence of human papillomavirus infection: keys to malignant progression

(2010) Jason Bodily et al.   TRENDS IN MICROBIOLOGY

HIV Infection and Gut Mucosal Immune Function: Updates on Pathogenesis with Implications for Management and Intervention

(2010) Barbara L. Shacklett et al.   Current Infectious Disease Reports

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Plasmacytoid dendritic cells express TRAIL and induce CD4+ T-cell apoptosis in HIV-1 viremic patients

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Peripheral Blood CCR4+CCR6+ and CXCR3+CCR6+ CD4+ T Cells Are Highly Permissive to HIV-1 Infection

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Clinician's guide to human papillomavirus immunology: knowns and unknowns

(2009) Mark H Einstein et al.   LANCET INFECTIOUS DISEASES

Human papillomavirus-related disease in people with HIV

(2008) Joel Palefsky   Current Opinion in HIV and AIDS