The longitudinal and cross-sectional heterogeneity of the intestinal microbiota

Infection trains the host for microbiota-enhanced resistance to pathogens

(2021) Apollo Stacy et al.   CELL

5-Aminosalicylic Acid Ameliorates Colitis and Checks Dysbiotic Escherichia coli Expansion by Activating PPAR-γ Signaling in the Intestinal Epithelium

(2021) Stephanie A. Cevallos et al.   mBio

Adherent-invasive E. coli metabolism of propanediol in Crohn’s disease regulates phagocytes to drive intestinal inflammation

(2021) Monica Viladomiu et al.   Cell Host & Microbe

The Habitat Filters of Microbiota-Nourishing Immunity

(2021) Brittany M. Miller et al.   Annual Review of Immunology

Host/microbiota interactions in health and diseases—Time for mucosal microbiology!

(2021) Noëmie Daniel et al.   Mucosal Immunology

High-Fat Diet and Antibiotics Cooperatively Impair Mitochondrial Bioenergetics to Trigger Dysbiosis that Exacerbates Pre-inflammatory Bowel Disease

(2020) Jee-Yon Lee et al.   Cell Host & Microbe

Microbiome definition re-visited: old concepts and new challenges

(2020) Gabriele Berg et al.   Microbiome

Epithelial-Derived Reactive Oxygen Species Enable AppBCX-Mediated Aerobic Respiration of Escherichia coli during Intestinal Inflammation

(2020) Rachael B. Chanin et al.   Cell Host & Microbe

Anaerobic Respiration of NOX1-Derived Hydrogen Peroxide Licenses Bacterial Growth at the Colonic Surface

(2020) Brittany M. Miller et al.   Cell Host & Microbe

Salmonella versus the Microbiome

(2020) Andrew W. L. Rogers et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A Developing Symbiosis: Enabling Cross-Talk Between Ecologists and Microbiome Scientists

(2019) Laura Tipton et al.   Frontiers in Microbiology

Microbiota-nourishing Immunity and Its Relevance for Ulcerative Colitis

(2019) Mariana X Byndloss et al.   INFLAMMATORY BOWEL DISEASES

Editing of the gut microbiota reduces carcinogenesis in mouse models of colitis-associated colorectal cancer

(2019) Wenhan Zhu et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Characterization of host defense molecules in the human pancreas

(2019) Anton Stenwall et al.   Islets

Dysbiosis: from fiction to function

(2019) Connor R Tiffany et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Microbiota-Nourishing Immunity: A Guide to Understanding Our Microbial Self

(2019) Yael Litvak et al.   IMMUNITY

Colitis susceptibility in mice with reactive oxygen species deficiency is mediated by mucus barrier and immune defense defects

(2019) Gabriella Aviello et al.   Mucosal Immunology

Increased Epithelial Oxygenation Links Colitis to an Expansion of Tumorigenic Bacteria

(2019) Stephanie A. Cevallos et al.   mBio

Extracellular electron transfer powers flavinylated extracellular reductases in Gram-positive bacteria

(2019) Samuel H. Light et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Iron and sulfur cycling in acid sulfate soil wetlands under dynamic redox conditions: A review

(2018) Niloofar Karimian et al.   CHEMOSPHERE

Healthy hosts rule within: ecological forces shaping the gut microbiota

(2018) Mariana X. Byndloss et al.   Mucosal Immunology

5-Aminosalicylic Acid Alters the Gut Bacterial Microbiota in Patients With Ulcerative Colitis

(2018) Jun Xu et al.   Frontiers in Microbiology

Precision editing of the gut microbiota ameliorates colitis

(2018) Wenhan Zhu et al.   NATURE

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

US Immigration Westernizes the Human Gut Microbiome

(2018) Pajau Vangay et al.   CELL

Colonocyte metabolism shapes the gut microbiota

(2018) Yael Litvak et al.   SCIENCE

Oxygen as a driver of gut dysbiosis

(2017) Fabian Rivera-Chávez et al.   FREE RADICAL BIOLOGY AND MEDICINE

iNOS- and NOX1-dependent ROS production maintains bacterial homeostasis in the ileum of mice

(2017) C Matziouridou et al.   Mucosal Immunology

NOX1 loss-of-function genetic variants in patients with inflammatory bowel disease

(2017) T Schwerd et al.   Mucosal Immunology

Escherichia colicytochromecperoxidase is a respiratory oxidase that enables the use of hydrogen peroxide as a terminal electron acceptor

(2017) Maryam Khademian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiota-activated PPAR-γ signaling inhibits dysbiotic Enterobacteriaceae expansion

(2017) Mariana X. Byndloss et al.   SCIENCE

Effect of cyclic redox oscillations on water quality in freshwater acid sulfate soil wetlands

(2017) Niloofar Karimian et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Hunger and microbiology: is a low gastric acid-induced bacterial overgrowth in the small intestine a contributor to malnutrition in developing countries?

(2017) Shafiqul A. Sarker et al.   Microbial Biotechnology

A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility

(2016) Mahesh S. Desai et al.   CELL

Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella

(2016) Fabian Rivera-Chávez et al.   Cell Host & Microbe

Diet-induced extinctions in the gut microbiota compound over generations

(2016) Erica D. Sonnenburg et al.   NATURE

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

Energy Taxis toward Host-Derived Nitrate Supports a Salmonella Pathogenicity Island 1-Independent Mechanism of Invasion

(2016) Fabian Rivera-Chávez et al.   mBio

Revised Estimates for the Number of Human and Bacteria Cells in the Body

(2016) Ron Sender et al.   PLOS BIOLOGY

Electromicrobiology: realities, grand challenges, goals and predictions

(2016) Kenneth H. Nealson et al.   Microbial Biotechnology

Biogeography of the Intestinal Mucosal and Lumenal Microbiome in the Rhesus Macaque

(2015) Koji Yasuda et al.   Cell Host & Microbe

Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function

(2015) Caleb J. Kelly et al.   Cell Host & Microbe

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Proteobacteria: microbial signature of dysbiosis in gut microbiota

(2015) Na-Ri Shin et al.   TRENDS IN BIOTECHNOLOGY

Biological significance of short-chain fatty acid metabolism by the intestinal microbiome

(2014) Elena Puertollano et al.   CURRENT OPINION IN CLINICAL NUTRITION AND METABOLIC CARE

Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota

(2014) Lindsey Albenberg et al.   GASTROENTEROLOGY

Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis

(2014) Aurélien Trompette et al.   NATURE MEDICINE

Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis

(2013) Malin E V Johansson et al.   GUT

Dysbiosis in inflammatory bowel diseases: the oxygen hypothesis

(2013) Lionel Rigottier-Gois   ISME Journal

Bacterial colonization factors control specificity and stability of the gut microbiota

(2013) S. Melanie Lee et al.   NATURE

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

(2013) Abdessamad El Kaoutari et al.   NATURE REVIEWS MICROBIOLOGY

Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing

(2013) D. Berry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Host-Derived Nitrate Boosts Growth of E. coli in the Inflamed Gut

(2013) S. E. Winter et al.   SCIENCE

Streptomycin-Induced Inflammation Enhances Escherichia coli Gut Colonization Through Nitrate Respiration

(2013) A. M. Spees et al.   mBio

Pathway engineering and synthetic biology using acetogens

(2012) Bettina Schiel-Bengelsdorf et al.   FEBS LETTERS

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

(2012) Erwin G Zoetendal et al.   ISME Journal

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

How glycan metabolism shapes the human gut microbiota

(2012) Nicole M. Koropatkin et al.   NATURE REVIEWS MICROBIOLOGY

Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

(2012) J. C. Arthur et al.   SCIENCE

A Crypt-Specific Core Microbiota Resides in the Mouse Colon

(2012) T. Pedron et al.   mBio

Bifidobacterium longum subsp. infantis ATCC 15697 α-Fucosidases Are Active on Fucosylated Human Milk Oligosaccharides

(2011) David A. Sela et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

Mucolytic Bacteria With Increased Prevalence in IBD Mucosa Augment In Vitro Utilization of Mucin by Other Bacteria

(2010) Chin Wen Png et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon

(2010) Yunwei Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis

(2010) Wendy S. Garrett et al.   Cell Host & Microbe

Spatial organization of intestinal microbiota in the mouse ascending colon

(2010) Gerardo M Nava et al.   ISME Journal

Fiber, FODMAPs, flora, flatulence, and the functional bowel disorders

(2010) Kok-Ann Gwee   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Examination of faecal Bifidobacterium populations in breast- and formula-fed infants during the first 18 months of life

(2010) L. C. Roger et al.   MICROBIOLOGY-SGM

Bacteria Penetrate the Inner Mucus Layer before Inflammation in the Dextran Sulfate Colitis Model

(2010) Malin E. V. Johansson et al.   PLoS One

Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides

(2010) David A. Sela et al.   TRENDS IN MICROBIOLOGY

Small intestinal bacterial overgrowth syndrome

(2010) Jan Bures   WORLD JOURNAL OF GASTROENTEROLOGY

Mechanisms of Microbial Hydrogen Disposal in the Human Colon and Implications for Health and Disease

(2010) Noriko Nakamura et al.   Annual Review of Food Science and Technology

Review article: small intestinal bacterial overgrowth, bile acid malabsorption and gluten intolerance as possible causes of chronic watery diarrhoea

(2009) X. FAN et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Electron transfer in syntrophic communities of anaerobic bacteria and archaea

(2009) Alfons J. M. Stams et al.   NATURE REVIEWS MICROBIOLOGY

Old Acetogens, New Light

(2008) Harold L. Drake et al.   Annals of the New York Academy of Sciences

Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation

(2008) Stephen W. Ragsdale et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

The ecology and biotechnology of sulphate-reducing bacteria

(2008) Gerard Muyzer et al.   NATURE REVIEWS MICROBIOLOGY

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

(2008) D. A. Sela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria

(2008) M. E. V. Johansson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA