PredcircRNA: computational classification of circular RNA from other long non-coding RNA using hybrid features

iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data

(2016) Kun Sun et al.   BMC GENOMICS

lncRNA-MFDL: identification of human long non-coding RNAs by fusing multiple features and using deep learning

(2015) Xiao-Nan Fan et al.   Molecular BioSystems

Exon-intron circular RNAs regulate transcription in the nucleus

(2015) Zhaoyong Li et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Exon-intron circular RNAs regulate transcription in the nucleus

(2015) Zhaoyong Li et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Prediction and classification of ncRNAs using structural information

(2014) Bharat Panwar et al.   BMC GENOMICS

Predicting protein–RNA interaction amino acids using random forest based on submodularity subset selection

(2014) Xiaoyong Pan et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Detecting and characterizing circular RNAs

(2014) William R Jeck et al.   NATURE BIOTECHNOLOGY

circBase: a database for circular RNAs

(2014) Petar Glažar et al.   RNA

The human splicing code reveals new insights into the genetic determinants of disease

(2014) H. Y. Xiong et al.   SCIENCE

Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features

(2014) Yuan Li et al.   Scientific Reports

Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation

(2014) Jakub O. Westholm et al.   Cell Reports

GraphProt: modeling binding preferences of RNA-binding proteins

(2014) Daniel Maticzka et al.   GENOME BIOLOGY

Long Noncoding RNAs: Cellular Address Codes in Development and Disease

(2013) Pedro J. Batista et al.   CELL

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features

(2013) Yiliang Ding et al.   NATURE

Natural RNA circles function as efficient microRNA sponges

(2013) Thomas B. Hansen et al.   NATURE

Circular RNAs are a large class of animal RNAs with regulatory potency

(2013) Sebastian Memczak et al.   NATURE

Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features

(2013) Jie Lv et al.   NUCLEIC ACIDS RESEARCH

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

LncRNADisease: a database for long-non-coding RNA-associated diseases

(2012) Geng Chen et al.   NUCLEIC ACIDS RESEARCH

Circular RNAs are abundant, conserved, and associated with ALU repeats

(2012) W. R. Jeck et al.   RNA

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

(2011) M. F. Lin et al.   BIOINFORMATICS

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Towards better accuracy for missing value estimation of epistatic miniarray profiling data by a novel ensemble approach

(2011) Xiao-Yong Pan et al.   GENOMICS

Non-coding RNAs: Meet thy masters

(2010) Fabrício F. Costa   BIOESSAYS

Large-Scale Prediction of Human Protein−Protein Interactions from Amino Acid Sequence Based on Latent Topic Features

(2010) Xiao-Yong Pan et al.   JOURNAL OF PROTEOME RESEARCH

Sequence variants on chromosome 9p21.3 confer risk for atherosclerotic stroke

(2009) Andreas Gschwendtner et al.   ANNALS OF NEUROLOGY

The Dynamic Landscapes of RNA Architecture

(2009) José Almeida Cruz et al.   CELL

Detection of nonneutral substitution rates on mammalian phylogenies

(2009) K. S. Pollard et al.   GENOME RESEARCH