Multi-tiered analyses of honey bees that resist or succumb to parasitic mites and viruses

The Heat Shock Response in the Western Honey Bee (Apis mellifera) is Antiviral

(2020) Alexander J. McMenamin et al.   Viruses-Basel

Meta-analysis of honey bee neurogenomic response links Deformed wing virus type A to precocious behavioral maturation

(2020) Ian M. Traniello et al.   Scientific Reports

Varroa destructor feeds primarily on honey bee fat body tissue and not hemolymph

(2019) Samuel D. Ramsey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptomic responses to diet quality and viral infection in Apis mellifera

(2019) Lindsay Rutter et al.   BMC GENOMICS

Disentangling host-parasite-pathogen interactions in a varroa-resistant honeybee population reveals virus tolerance as an independent, naturally adapted survival mechanism

(2019) Srinivas Thaduri et al.   Scientific Reports

Varroa destructor parasitism has a greater effect on proteome changes than the deformed wing virus and activates TGF-β signaling pathways

(2019) Tomas Erban et al.   Scientific Reports

The transcriptomic signature of low aggression in honey bees resembles a response to infection

(2019) Clare C. Rittschof et al.   BMC GENOMICS

Virus–Receptor Interactions: The Key to Cellular Invasion

(2018) Melissa S. Maginnis   JOURNAL OF MOLECULAR BIOLOGY

Antiviral Defense in Invertebrates

(2018) Michelle Flenniken   Viruses-Basel

Recent spread of Varroa destructor virus-1, a honey bee pathogen, in the United States

(2017) Eugene V. Ryabov et al.   Scientific Reports

Multiyear survey targeting disease incidence in US honey bees

(2016) Kirsten S. Traynor et al.   APIDOLOGIE

A mutualistic symbiosis between a parasitic mite and a pathogenic virus undermines honey bee immunity and health

(2016) Gennaro Di Prisco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural Varroa mite-surviving Apis mellifera honeybee populations

(2015) Barbara Locke   APIDOLOGIE

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine

(2015) Christine G. Elsik et al.   NUCLEIC ACIDS RESEARCH

Parallel Epigenomic and Transcriptomic Responses to Viral Infection in Honey Bees (Apis mellifera)

(2015) David A. Galbraith et al.   PLoS Pathogens

Antiviral defense mechanisms in honey bees

(2015) Laura M Brutscher et al.   Current Opinion in Insect Science

The role of cellular adhesion molecules in virus attachment and entry

(2014) D. Bhella   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Virulent Strain of Deformed Wing Virus (DWV) of Honeybees (Apis mellifera) Prevails after Varroa destructor-Mediated, or In Vitro, Transmission

(2014) Eugene V. Ryabov et al.   PLoS Pathogens

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Pathogen Webs in Collapsing Honey Bee Colonies

(2012) R. Scott Cornman et al.   PLoS One

Dead or Alive: Deformed Wing Virus and Varroa destructor Reduce the Life Span of Winter Honeybees

(2011) Benjamin Dainat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS