Parallel Epigenomic and Transcriptomic Responses to Viral Infection in Honey Bees (Apis mellifera)

Cytosine DNA Methylation Is Found in Drosophila melanogaster but Absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Other Yeast Species

(2014) Floriana Capuano et al.   ANALYTICAL CHEMISTRY

Finding the missing honey bee genes: lessons learned from a genome upgrade

(2014) Christine G Elsik et al.   BMC GENOMICS

A national survey of managed honey bee 2012–2013 annual colony losses in the USA: results from the Bee Informed Partnership

(2014) Nathalie A Steinhauer et al.   JOURNAL OF APICULTURAL RESEARCH

Dynamics of the Presence of Israeli Acute Paralysis Virus in Honey Bee Colonies with Colony Collapse Disorder

(2014) Chunsheng Hou et al.   Viruses-Basel

A Virulent Strain of Deformed Wing Virus (DWV) of Honeybees (Apis mellifera) Prevails after Varroa destructor-Mediated, or In Vitro, Transmission

(2014) Eugene V. Ryabov et al.   PLoS Pathogens

Israeli Acute Paralysis Virus: Epidemiology, Pathogenesis and Implications for Honey Bee Health

(2014) Yan Ping Chen et al.   PLoS Pathogens

Chronic parasitization by Nosema microsporidia causes global expression changes in core nutritional, metabolic and behavioral pathways in honey bee workers (Apis mellifera)

(2013) Holly L Holt et al.   BMC GENOMICS

In Vitro Infection of Pupae with Israeli Acute Paralysis Virus Suggests Disturbance of Transcriptional Homeostasis in Honey Bees (Apis mellifera)

(2013) Humberto F. Boncristiani et al.   PLoS One

Non-Specific dsRNA-Mediated Antiviral Response in the Honey Bee

(2013) Michelle L. Flenniken et al.   PLoS One

Viral Infection Affects Sucrose Responsiveness and Homing Ability of Forager Honey Bees, Apis mellifera L.

(2013) Zhiguo Li et al.   PLoS One

Neonicotinoid clothianidin adversely affects insect immunity and promotes replication of a viral pathogen in honey bees

(2013) G. Di Prisco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA methylation and transcriptional noise

(2013) Iksoo Huh et al.   Epigenetics & Chromatin

Function and Evolution of DNA Methylation in Nasonia vitripennis

(2013) Xu Wang et al.   PLoS Genetics

Effects of immunostimulation on social behavior, chemical communication and genome-wide gene expression in honey bee workers (Apis mellifera)

(2012) Freddie-Jeanne Richard et al.   BMC GENOMICS

Reduction in deformed wing virus infection in larval and adult honey bees (Apis mellifera L.) by double-stranded RNA ingestion

(2012) S. D. Desai et al.   INSECT MOLECULAR BIOLOGY

Transient Activation of the PI3K-AKT Pathway by Hepatitis C Virus to Enhance Viral Entry

(2012) Zhe Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Beyond RNAi: Antiviral defense strategies in Drosophila and mosquito

(2012) Sarah H. Merkling et al.   JOURNAL OF INSECT PHYSIOLOGY

The Evolution of Invertebrate Gene Body Methylation

(2012) S. Sarda et al.   MOLECULAR BIOLOGY AND EVOLUTION

Predictive Markers of Honey Bee Colony Collapse

(2012) Benjamin Dainat et al.   PLoS One

Winter Survival of Individual Honey Bees and Honey Bee Colonies Depends on Level of Varroa destructor Infestation

(2012) Coby van Dooremalen et al.   PLoS One

Pathogen Webs in Collapsing Honey Bee Colonies

(2012) R. Scott Cornman et al.   PLoS One

DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees

(2012) S. Foret et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phosphatidylinositol-3-kinase (PI3K) is activated by influenza virus vRNA via the pathogen pattern receptor Rig-I to promote efficient type I interferon production

(2011) Eike R. Hrincius et al.   CELLULAR MICROBIOLOGY

DNA methylation changes elicited by social stimuli in the brains of worker honey bees

(2011) G. A. Lockett et al.   GENES BRAIN AND BEHAVIOR

What are the determinants of gene expression levels and breadths in the human genome?

(2011) Jungsun Park et al.   HUMAN MOLECULAR GENETICS

cGMP modulates responses to queen mandibular pheromone in worker honey bees

(2011) Brendon L. Fussnecker et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY A-NEUROETHOLOGY SENSORY NEURAL AND BEHAVIORAL PHYSIOLOGY

Epigenetic Changes Mediated by MicroRNA miR29 Activate Cyclooxygenase 2 and Lambda-1 Interferon Production during Viral Infection

(2011) J. Fang et al.   JOURNAL OF VIROLOGY

Comparative Analyses of DNA Methylation and Sequence Evolution Using Nasonia Genomes

(2011) J. Park et al.   MOLECULAR BIOLOGY AND EVOLUTION

Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia

(2011) Charles Runckel et al.   PLoS One

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

The German bee monitoring project: a long term study to understand periodically high winter losses of honey bee colonies

(2010) Elke Genersch et al.   APIDOLOGIE

RNA interference modulates replication of dengue virus in Drosophila melanogaster cells

(2010) Swati Mukherjee et al.   BMC MICROBIOLOGY

Prevention of Chinese Sacbrood Virus Infection in Apis cerana using RNA Interference

(2010) Xuejiao Liu et al.   CURRENT MICROBIOLOGY

DNA Methylation and Genome Evolution in Honeybee: Gene Length, Expression, Functional Enrichment Covary with the Evolutionary Signature of DNA Methylation

(2010) Jia Zeng et al.   Genome Biology and Evolution

IL-32: A Host Proinflammatory Factor against Influenza Viral Replication Is Upregulated by Aberrant Epigenetic Modifications during Influenza A Virus Infection

(2010) W. Li et al.   JOURNAL OF IMMUNOLOGY

Activation of the Inositol (1,4,5)-Triphosphate Calcium Gate Receptor Is Required for HIV-1 Gag Release

(2010) L. S. Ehrlich et al.   JOURNAL OF VIROLOGY

Involvement of DNA methylation in memory processing in the honey bee

(2010) Gabrielle A. Lockett et al.   NEUROREPORT

Tobacco Mosaic Virus Infection Results in an Increase in Recombination Frequency and Resistance to Viral, Bacterial, and Fungal Pathogens in the Progeny of Infected Tobacco Plants

(2010) P. Kathiria et al.   PLANT PHYSIOLOGY

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers

(2010) Frank Lyko et al.   PLOS BIOLOGY

Large-Scale Field Application of RNAi Technology Reducing Israeli Acute Paralysis Virus Disease in Honey Bees (Apis mellifera, Hymenoptera: Apidae)

(2010) Wayne Hunter et al.   PLoS Pathogens

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

BSMAP: whole genome bisulfite sequence MAPping program

(2009) Yuanxin Xi et al.   BMC BIOINFORMATICS

Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes

(2009) Sylvain Foret et al.   BMC GENOMICS

IAPV, a bee-affecting virus associated with Colony Collapse Disorder can be silenced by dsRNA ingestion

(2009) E. Maori et al.   INSECT MOLECULAR BIOLOGY

In Silico Prediction of Two Classes of Honeybee Genes with CpG Deficiency or CpG Enrichment and Sorting According to Gene Ontology Classes

(2009) Yong Wang et al.   JOURNAL OF MOLECULAR EVOLUTION

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Colony Collapse Disorder: A Descriptive Study

(2009) Dennis vanEngelsdorp et al.   PLoS One

DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera

(2009) N. Elango et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA methylation landscapes: provocative insights from epigenomics

(2008) Miho M. Suzuki et al.   NATURE REVIEWS GENETICS

Nutritional Control of Reproductive Status in Honeybees via DNA Methylation

(2008) R. Kucharski et al.   SCIENCE