Metagenomics-Based Analysis of the Age-Related Cumulative Effect of Antibiotic Resistance Genes in Gut Microbiota

Helicobacter pylori antimicrobial resistance and gene variants in high and low gastric cancer risk populations

(2021) Anthony Mannion et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Diet-induced obesity leads to alterations in behavior and gut microbiota composition in mice

(2021) Renato Elias Moreira Júnior et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Regulation and function of class A Penicillin-binding proteins

(2021) Manuel Pazos et al.   CURRENT OPINION IN MICROBIOLOGY

Distribution of antibiotic resistance genes in the environment

(2021) Mei Zhuang et al.   ENVIRONMENTAL POLLUTION

Metagenomic analysis revealed the potential role of gut microbiome in gout

(2021) Yongliang Chu et al.   npj Biofilms and Microbiomes

Antimicrobial resistance in the farm-to-plate continuum: more than a food safety issue

(2021) Luria L Founou et al.   Future Science OA

Beta-lactam resistance development during the treatment processes of municipal wastewater treatment plants

(2021) Tereza Stachurová et al.   CHEMOSPHERE

Understanding the impact of antibiotic perturbation on the human microbiome

(2020) D. J. Schwartz et al.   Genome Medicine

Antibiotics in Food Chain: The Consequences for Antibiotic Resistance

(2020) Shashi B. Kumar et al.   Antibiotics-Basel

Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome

(2019) Andrew J. Gasparrini et al.   Nature Microbiology

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

(2019) Brian P Alcock et al.   NUCLEIC ACIDS RESEARCH

Ecological effects of antibiotics on natural ecosystems: A review

(2018) Paola Grenni et al.   MICROCHEMICAL JOURNAL

Surveillance of antimicrobial consumption in animal production sectors of low- and middle-income countries: Optimizing use and addressing antimicrobial resistance

(2018) Daniel Schar et al.   PLOS MEDICINE

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

Antibiotic Resistance Mechanisms in Bacteria: Relationships Between Resistance Determinants of Antibiotic Producers, Environmental Bacteria, and Clinical Pathogens

(2018) Elizabeth Peterson et al.   Frontiers in Microbiology

Antibiotic resistome in a large-scale healthy human gut microbiota deciphered by metagenomic and network analyses

(2017) Jie Feng et al.   ENVIRONMENTAL MICROBIOLOGY

Efflux drug transporters at the forefront of antimicrobial resistance

(2017) Tahmina Rahman et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

The Rising Tide of Antimicrobial Resistance in Aquaculture: Sources, Sinks and Solutions

(2017) Joy Watts et al.   Marine Drugs

ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database

(2016) Ying Yang et al.   BIOINFORMATICS

Access to effective antimicrobials: a worldwide challenge

(2016) Ramanan Laxminarayan et al.   LANCET

Interconnected microbiomes and resistomes in low-income human habitats

(2016) Erica C. Pehrsson et al.   NATURE

The Human Intestinal Microbiome in Health and Disease

(2016) Susan V. Lynch et al.   NEW ENGLAND JOURNAL OF MEDICINE

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

(2015) Bing Li et al.   ISME Journal

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

(2015) Kristoffer Forslund et al.   NATURE

The human gut resistome

(2015) W. van Schaik   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Patterns and ecological drivers of ocean viral communities

(2015) J. R. Brum et al.   SCIENCE

Gut microbiome development along the colorectal adenoma–carcinoma sequence

(2015) Qiang Feng et al.   Nature Communications

Metagenomic insights into the human gut resistome and the forces that shape it

(2014) Kristoffer Forslund et al.   BIOESSAYS

Potential of fecal microbiota for early-stage detection of colorectal cancer

(2014) G. Zeller et al.   Molecular Systems Biology

Alterations of the human gut microbiome in liver cirrhosis

(2014) Nan Qin et al.   NATURE

Biogeography and individuality shape function in the human skin metagenome

(2014) Julia Oh et al.   NATURE

Bacterial phylogeny structures soil resistomes across habitats

(2014) Kevin J. Forsberg et al.   NATURE

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

(2014) H Bjørn Nielsen et al.   NATURE BIOTECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

DNA microarray analysis reveals that antibiotic resistance-gene diversity in human gut microbiota is age related

(2014) Na Lu et al.   Scientific Reports

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders

(2013) Elaine Y. Hsiao et al.   CELL

Country-specific antibiotic use practices impact the human gut resistome

(2013) K. Forslund et al.   GENOME RESEARCH

Antibiotic resistance—the need for global solutions

(2013) Ramanan Laxminarayan et al.   LANCET INFECTIOUS DISEASES

Antibiotic resistance: The last resort

(2013) Maryn McKenna   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review

(2013) L. Rizzo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota

(2013) Yongfei Hu et al.   Nature Communications

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

(2013) Jose U Scher et al.   eLife

Dissemination of antibiotic-resistant enterococci within the ward environment: The role of airborne bacteria and the risk posed by unrecognized carriers

(2012) Monika Muzslay et al.   AMERICAN JOURNAL OF INFECTION CONTROL

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data

(2012) Daniel R. Mende et al.   PLoS One

Inflammation Drives Dysbiosis and Bacterial Invasion in Murine Models of Ileal Crohn’s Disease

(2012) Melanie Craven et al.   PLoS One

The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

(2012) K. J. Forsberg et al.   SCIENCE

Symptomatic atherosclerosis is associated with an altered gut metagenome

(2012) Fredrik H. Karlsson et al.   Nature Communications

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Ecology drives a global network of gene exchange connecting the human microbiome

(2011) Chris S. Smillie et al.   NATURE

Comparative Metagenomic Study of Alterations to the Intestinal Microbiota and Risk of NosocomialClostridum difficile–Associated Disease

(2010) Amee R. Manges et al.   JOURNAL OF INFECTIOUS DISEASES

Global spread of New Delhi metallo-β-lactamase 1

(2010) Anette M Hammerum et al.   LANCET INFECTIOUS DISEASES

Long-term impacts of antibiotic exposure on the human intestinal microbiota

(2010) C. Jernberg et al.   MICROBIOLOGY-SGM

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Mycobacterium tuberculosis: drug resistance and future perspectives

(2009) Giovanna Riccardi et al.   Future Microbiology

Antibiotic resistance in China—a major future challenge

(2009) Andreas Heddini et al.   LANCET

Distribution of Tetracycline and Erythromycin Resistance Genes Among Human Oral and Fecal Metagenomic DNA

(2009) Lorna A. Seville et al.   Microbial Drug Resistance

Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics

(2009) R. Szczepanowski et al.   MICROBIOLOGY-SGM

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

(2009) M. O. A. Sommer et al.   SCIENCE

The porin and the permeating antibiotic: a selective diffusion barrier in Gram-negative bacteria

(2008) Jean-Marie Pagès et al.   NATURE REVIEWS MICROBIOLOGY

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH