Understanding the impact of antibiotic perturbation on the human microbiome
Published 2020 View Full Article
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Title
Understanding the impact of antibiotic perturbation on the human microbiome
Authors
Keywords
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Journal
Genome Medicine
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-09-28
DOI
10.1186/s13073-020-00782-x
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Note: Only part of the references are listed.- Establishing or Exaggerating Causality for the Gut Microbiome: Lessons from Human Microbiota-Associated Rodents
- (2020) Jens Walter et al. CELL
- Modelling microbiome recovery after antibiotics using a stability landscape framework
- (2019) Liam P. Shaw et al. ISME Journal
- Adaptive Evolution within Gut Microbiomes of Healthy People
- (2019) Shijie Zhao et al. Cell Host & Microbe
- Linking the resistome and plasmidome to the microbiome
- (2019) Thibault Stalder et al. ISME Journal
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
- (2019) Jason Lloyd-Price et al. NATURE
- Perinatal factors affect the gut microbiota up to four years after birth
- (2019) Fiona Fouhy et al. Nature Communications
- Antibacterial mass drug administration for child mortality reduction: Opportunities, concerns, and possible next steps
- (2019) Isaac I. Bogoch et al. PLoS Neglected Tropical Diseases
- Antibiotic Treatment Drives the Diversification of the Human Gut Resistome
- (2019) Jun Li et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Macrolide Resistance in MORDOR I — A Cluster-Randomized Trial in Niger
- (2019) Thuy Doan et al. NEW ENGLAND JOURNAL OF MEDICINE
- Quantifying and Understanding Well-to-Well Contamination in Microbiome Research
- (2019) Jeremiah J. Minich et al. mSystems
- The Role of Fecal Microbiota Transplantation in Reducing Intestinal Colonization With Antibiotic-Resistant Organisms: The Current Landscape and Future Directions
- (2019) Michael H Woodworth et al. Open Forum Infectious Diseases
- Distinct impact of antibiotics on the gut microbiome and resistome: a longitudinal multicenter cohort study
- (2019) Matthias Willmann et al. BMC BIOLOGY
- Complex interactions between the microbiome and cancer immune therapy
- (2019) Drew J. Schwartz et al. CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES
- Gut microbiome alteration in MORDOR I: a community-randomized trial of mass azithromycin distribution
- (2019) T. Doan et al. NATURE MEDICINE
- Consistent and correctable bias in metagenomic sequencing experiments
- (2019) Michael R McLaren et al. eLife
- Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome
- (2019) Andrew J. Gasparrini et al. Nature Microbiology
- Fecal transplant in children with Clostridioides difficile gives sustained reduction in antimicrobial resistance and potential pathogen burden
- (2019) Suchitra K Hourigan et al. Open Forum Infectious Diseases
- The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations
- (2019) Adrian Tett et al. Cell Host & Microbe
- Drug-Resistant E. coli Bacteremia Transmitted by Fecal Microbiota Transplant
- (2019) Zachariah DeFilipp et al. NEW ENGLAND JOURNAL OF MEDICINE
- Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces
- (2019) Alaric W. D’Souza et al. Nature Communications
- A Bioinformatic Analysis of Integrative Mobile Genetic Elements Highlights Their Role in Bacterial Adaptation
- (2019) Matthew G. Durrant et al. Cell Host & Microbe
- Cotrimoxazole Prophylaxis Increases Resistance Gene Prevalence and α-Diversity but Decreases β-Diversity in the Gut Microbiome of Human Immunodeficiency Virus–Exposed, Uninfected Infants
- (2019) Alaric W D’Souza et al. CLINICAL INFECTIOUS DISEASES
- Increased risk of acquisition and transmission of ESBL-producing Enterobacteriaceae in malnourished children exposed to amoxicillin
- (2019) Naouale Maataoui et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation
- (2018) Christopher S. Smillie et al. Cell Host & Microbe
- Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
- (2018) Moran Yassour et al. Cell Host & Microbe
- Current understanding of the human microbiome
- (2018) Jack A Gilbert et al. NATURE MEDICINE
- Best practices for analysing microbiomes
- (2018) Rob Knight et al. NATURE REVIEWS MICROBIOLOGY
- Azithromycin to Reduce Childhood Mortality in Sub-Saharan Africa
- (2018) Jeremy D. Keenan et al. NEW ENGLAND JOURNAL OF MEDICINE
- Maturation of the gut microbiome and risk of asthma in childhood
- (2018) Jakob Stokholm et al. Nature Communications
- Role of the gut microbiota in nutrition and health
- (2018) Ana M Valdes et al. BMJ-British Medical Journal
- Role of the gut microbiota in nutrition and health
- (2018) Ana M Valdes et al. BMJ-British Medical Journal
- Stability of the human faecal microbiome in a cohort of adult men
- (2018) Raaj S. Mehta et al. Nature Microbiology
- Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT
- (2018) Jotham Suez et al. CELL
- Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features
- (2018) Niv Zmora et al. CELL
- Extensive impact of non-antibiotic drugs on human gut bacteria
- (2018) Lisa Maier et al. NATURE
- Variations in Neonatal Antibiotic Use
- (2018) Joseph Schulman et al. PEDIATRICS
- Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant
- (2018) Ying Taur et al. Science Translational Medicine
- Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements
- (2018) Katariina Pärnänen et al. Nature Communications
- The human gut microbiome in early-onset type 1 diabetes from the TEDDY study
- (2018) Tommi Vatanen et al. NATURE
- Temporal development of the gut microbiome in early childhood from the TEDDY study
- (2018) Christopher J. Stewart et al. NATURE
- Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes
- (2018) Aimee M. Baumann-Dudenhoeffer et al. NATURE MEDICINE
- Fecal microbiota transplantation for refractory immune checkpoint inhibitor-associated colitis
- (2018) Yinghong Wang et al. NATURE MEDICINE
- Species-level functional profiling of metagenomes and metatranscriptomes
- (2018) Eric A. Franzosa et al. NATURE METHODS
- Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
- (2018) Nicole M. Davis et al. Microbiome
- Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life
- (2018) Tommi Vatanen et al. Nature Microbiology
- Recovery of gut microbiota of healthy adults following antibiotic exposure
- (2018) Albert Palleja et al. Nature Microbiology
- Impact of Amoxicillin-Clavulanate followed by Autologous Fecal Microbiota Transplantation on Fecal Microbiome Structure and Metabolic Potential
- (2018) Christopher Bulow et al. mSphere
- Short-course versus long-course oral antibiotic treatment for infections treated in outpatient settings: a review of systematic reviews
- (2017) Elizabeth E Dawson-Hahn et al. FAMILY PRACTICE
- Import and spread of extended-spectrum β-lactamase-producing Enterobacteriaceae by international travellers (COMBAT study): a prospective, multicentre cohort study
- (2017) Maris S Arcilla et al. LANCET INFECTIOUS DISEASES
- Selective depletion of uropathogenic E. coli from the gut by a FimH antagonist
- (2017) Caitlin N. Spaulding et al. NATURE
- Maturation of the infant microbiome community structure and function across multiple body sites and in relation to mode of delivery
- (2017) Derrick M Chu et al. NATURE MEDICINE
- Next-generation approaches to understand and combat the antibiotic resistome
- (2017) Terence S. Crofts et al. NATURE REVIEWS MICROBIOLOGY
- Gut microbiome modulates response to anti–PD-1 immunotherapy in melanoma patients
- (2017) V. Gopalakrishnan et al. SCIENCE
- The role of the microbiome in human health and disease: an introduction for clinicians
- (2017) Vincent B Young BMJ-British Medical Journal
- The role of the microbiome in human health and disease: an introduction for clinicians
- (2017) Vincent B Young BMJ-British Medical Journal
- Linking the Gut Microbial Ecosystem with the Environment: Does Gut Health Depend on Where We Live?
- (2017) Nishat Tasnim et al. Frontiers in Microbiology
- Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects
- (2017) Elena Buelow et al. Microbiome
- Impact of intrapartum antimicrobial prophylaxis upon the intestinal microbiota and the prevalence of antibiotic resistance genes in vaginally delivered full-term neonates
- (2017) Alicja Nogacka et al. Microbiome
- Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort
- (2017) Cian J. Hill et al. Microbiome
- The Central Nervous System and the Gut Microbiome
- (2016) Gil Sharon et al. CELL
- Fecal Microbial Transplants Reduce Antibiotic-resistant Genes in Patients With RecurrentClostridium difficileInfection
- (2016) Braden Millan et al. CLINICAL INFECTIOUS DISEASES
- Short- and long-term effects of oral vancomycin on the human intestinal microbiota
- (2016) Sandrine Isaac et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Reducing unnecessary antibiotic use in the neonatal intensive care unit (SCOUT): a prospective interrupted time-series study
- (2016) Joseph B Cantey et al. LANCET INFECTIOUS DISEASES
- Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation
- (2016) Hilary P. Browne et al. NATURE
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- The Human Intestinal Microbiome in Health and Disease
- (2016) Susan V. Lynch et al. NEW ENGLAND JOURNAL OF MEDICINE
- Routine Amoxicillin for Uncomplicated Severe Acute Malnutrition in Children
- (2016) Sheila Isanaka et al. NEW ENGLAND JOURNAL OF MEDICINE
- CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
- (2016) Baofeng Jia et al. NUCLEIC ACIDS RESEARCH
- Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability
- (2016) Moran Yassour et al. Science Translational Medicine
- Antibiotics, birth mode, and diet shape microbiome maturation during early life
- (2016) Nicholas A. Bokulich et al. Science Translational Medicine
- The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation
- (2016) Amy Langdon et al. Genome Medicine
- Bloom and bust: intestinal microbiota dynamics in response to hospital exposures and Clostridium difficile colonization or infection
- (2016) Caroline Vincent et al. Microbiome
- Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome
- (2016) Molly K. Gibson et al. Nature Microbiology
- Clearance of Vancomycin-ResistantEnterococcusConcomitant With Administration of a Microbiota-Based Drug Targeted at RecurrentClostridium difficileInfection
- (2016) Erik R. Dubberke et al. Open Forum Infectious Diseases
- Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
- (2015) James D. Lewis et al. Cell Host & Microbe
- Safety and Durability of RBX2660 (Microbiota Suspension) for RecurrentClostridium difficileInfection: Results of the PUNCH CD Study
- (2015) Robert Orenstein et al. CLINICAL INFECTIOUS DISEASES
- Antimicrobials Increase Travelers' Risk of Colonization by Extended-Spectrum Betalactamase-Producing Enterobacteriaceae
- (2015) A. Kantele et al. CLINICAL INFECTIOUS DISEASES
- The initial state of the human gut microbiome determines its reshaping by antibiotics
- (2015) Frédéric Raymond et al. ISME Journal
- Early life dynamics of the human gut virome and bacterial microbiome in infants
- (2015) Efrem S Lim et al. NATURE MEDICINE
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Prospective Surveillance of Antibiotic Use in the Neonatal Intensive Care Unit
- (2015) Joseph B. Cantey et al. PEDIATRIC INFECTIOUS DISEASE JOURNAL
- Neonatal Intensive Care Unit Antibiotic Use
- (2015) J. Schulman et al. PEDIATRICS
- Same Exposure but Two Radically Different Responses to Antibiotics: Resilience of the Salivary Microbiome versus Long-Term Microbial Shifts in Feces
- (2015) E. Zaura et al. mBio
- Preterm gut microbiota and metabolome following discharge from intensive care
- (2015) Christopher J. Stewart et al. Scientific Reports
- High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED
- (2015) James Kaminski et al. PLoS Computational Biology
- Late-onset neonatal sepsis: recent developments
- (2014) Ying Dong et al. Archives of Disease in Childhood-Fetal and Neonatal Edition
- The Treatment-Naive Microbiome in New-Onset Crohn’s Disease
- (2014) Dirk Gevers et al. Cell Host & Microbe
- Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
- (2014) Molly K Gibson et al. ISME Journal
- Persistent gut microbiota immaturity in malnourished Bangladeshi children
- (2014) Sathish Subramanian et al. NATURE
- Host lifestyle affects human microbiota on daily timescales
- (2014) Lawrence A David et al. GENOME BIOLOGY
- Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants
- (2014) Brandon Brooks et al. Microbiome
- The human intestinal microbiome at extreme ages of life. Dietary intervention as a way to counteract alterations
- (2014) Nuria Salazar et al. Frontiers in Genetics
- Diet rapidly and reproducibly alters the human gut microbiome
- (2013) Lawrence A. David et al. NATURE
- Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor
- (2013) M. I. Smith et al. SCIENCE
- The Long-Term Stability of the Human Gut Microbiota
- (2013) J. J. Faith et al. SCIENCE
- Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice
- (2013) V. K. Ridaura et al. SCIENCE
- Long-Term Follow-Up of Colonoscopic Fecal Microbiota Transplant for Recurrent Clostridium difficile Infection
- (2012) Lawrence J Brandt et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- Probiotics for the Prevention and Treatment of Antibiotic-Associated Diarrhea
- (2012) Sydne J. Newberry JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Human gut microbiome viewed across age and geography
- (2012) Tanya Yatsunenko et al. NATURE
- The Application of Ecological Theory Toward an Understanding of the Human Microbiome
- (2012) E. K. Costello et al. SCIENCE
- Massive Increase, Spread, and Exchange of Extended Spectrum -Lactamase-Encoding Genes Among Intestinal Enterobacteriaceae in Hospitalized Children With Severe Acute Malnutrition in Niger
- (2011) P.-L. Woerther et al. CLINICAL INFECTIOUS DISEASES
- Human nutrition, the gut microbiome and the immune system
- (2011) Andrew L. Kau et al. NATURE
- Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets
- (2011) Robert Schmieder et al. PLoS One
- The Toll-Like Receptor 2 Pathway Establishes Colonization by a Commensal of the Human Microbiota
- (2011) J. L. Round et al. SCIENCE
- Moving pictures of the human microbiome
- (2011) J Gregory Caporaso et al. GENOME BIOLOGY
- Long-term impacts of antibiotic exposure on the human intestinal microbiota
- (2010) C. Jernberg et al. MICROBIOLOGY-SGM
- Composition, variability, and temporal stability of the intestinal microbiota of the elderly
- (2010) M. J. Claesson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
- (2010) L. Dethlefsen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The human microbiome harbors a diverse reservoir of antibiotic resistance genes
- (2010) Morten O.A. Sommer et al. Virulence
- Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora
- (2009) M. O. A. Sommer et al. SCIENCE
- The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing
- (2008) Les Dethlefsen et al. PLOS BIOLOGY
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