Antibiotic resistome in a large-scale healthy human gut microbiota deciphered by metagenomic and network analyses

ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database

(2016) Ying Yang et al.   BIOINFORMATICS

World Health Organization Ranking of Antimicrobials According to Their Importance in Human Medicine: A Critical Step for Developing Risk Management Strategies to Control Antimicrobial Resistance From Food Animal Production

(2016) Peter C. Collignon et al.   CLINICAL INFECTIOUS DISEASES

Co-selection of Mercury and Multiple Antibiotic Resistances in Bacteria Exposed to Mercury in the Fundulus heteroclitus Gut Microbiome

(2016) Nicole A. Lloyd et al.   CURRENT MICROBIOLOGY

The gut microbiome of healthy Japanese and its microbial and functional uniqueness

(2016) Suguru Nishijima et al.   DNA RESEARCH

Field-based evidence for copper contamination induced changes of antibiotic resistance in agricultural soils

(2016) Hang-Wei Hu et al.   ENVIRONMENTAL MICROBIOLOGY

Interconnected microbiomes and resistomes in low-income human habitats

(2016) Erica C. Pehrsson et al.   NATURE

The structure and diversity of human, animal and environmental resistomes

(2016) Chandan Pal et al.   Microbiome

Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota

(2015) Simone Rampelli et al.   CURRENT BIOLOGY

Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human Feces

(2015) Liping Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Comprehensive Evaluation of Antibiotics Emission and Fate in the River Basins of China: Source Analysis, Multimedia Modeling, and Linkage to Bacterial Resistance

(2015) Qian-Qian Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Antibiotic Resistome and Its Association with Bacterial Communities during Sewage Sludge Composting

(2015) Jian-Qiang Su et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The initial state of the human gut microbiome determines its reshaping by antibiotics

(2015) Frédéric Raymond et al.   ISME Journal

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

(2015) Bing Li et al.   ISME Journal

Human exposure in Italy to lead, cadmium and mercury through fish and seafood product consumption from Eastern Central Atlantic Fishing Area

(2015) Silvia Zaza et al.   JOURNAL OF FOOD COMPOSITION AND ANALYSIS

Gut microbiome development along the colorectal adenoma–carcinoma sequence

(2015) Qiang Feng et al.   Nature Communications

Limited dissemination of the wastewater treatment plant core resistome

(2015) Christian Munck et al.   Nature Communications

Gut resistome development in healthy twin pairs in the first year of life

(2015) Aimee M. Moore et al.   Microbiome

The microbiome of uncontacted Amerindians

(2015) J. C. Clemente et al.   Science Advances

Metagenomic insights into the human gut resistome and the forces that shape it

(2014) Kristoffer Forslund et al.   BIOESSAYS

Four Cases of Bacteremia Caused by Oscillibacter ruminantium, a Newly Described Species

(2014) T. V. Sydenham et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Bioaccumulation of heavy metals in commercially important marine fishes from Mumbai Harbor, India

(2014) A. Velusamy et al.   MARINE POLLUTION BULLETIN

Intestinal Colonization by a Lachnospiraceae Bacterium Contributes to the Development of Diabetes in Obese Mice

(2014) Keishi Kameyama et al.   MICROBES AND ENVIRONMENTS

Potential of fecal microbiota for early-stage detection of colorectal cancer

(2014) G. Zeller et al.   Molecular Systems Biology

Alterations of the human gut microbiome in liver cirrhosis

(2014) Nan Qin et al.   NATURE

Bacterial phylogeny structures soil resistomes across habitats

(2014) Kevin J. Forsberg et al.   NATURE

Relating the metatranscriptome and metagenome of the human gut

(2014) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

(2013) Sushim Kumar Gupta et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Country-specific antibiotic use practices impact the human gut resistome

(2013) K. Forslund et al.   GENOME RESEARCH

Antibiotic resistance—the need for global solutions

(2013) Ramanan Laxminarayan et al.   LANCET INFECTIOUS DISEASES

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Pediatric Fecal Microbiota Harbor Diverse and Novel Antibiotic Resistance Genes

(2013) Aimée M. Moore et al.   PLoS One

Diverse and abundant antibiotic resistance genes in Chinese swine farms

(2013) Yong-Guan Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota

(2013) Yongfei Hu et al.   Nature Communications

Context matters — the complex interplay between resistome genotypes and resistance phenotypes

(2012) Gautam Dantas et al.   CURRENT OPINION IN MICROBIOLOGY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Anthropology of microbes

(2012) A. Benezra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

(2012) K. J. Forsberg et al.   SCIENCE

Antibiotic resistance is ancient

(2011) Vanessa M. D’Costa et al.   NATURE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

The Human Gut Microbiome: Ecology and Recent Evolutionary Changes

(2010) Jens Walter et al.   Annual Review of Microbiology

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

β-Lactam and glycopeptide antibiotics: first and last line of defense?

(2010) Srdjan Jovetic et al.   TRENDS IN BIOTECHNOLOGY

VanA-Type Vancomycin-Resistant Staphylococcus aureus

(2009) B. Perichon et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Antibiotic resistance in China—a major future challenge

(2009) Andreas Heddini et al.   LANCET

Distribution of Tetracycline and Erythromycin Resistance Genes Among Human Oral and Fecal Metagenomic DNA

(2009) Lorna A. Seville et al.   Microbial Drug Resistance

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

(2009) M. O. A. Sommer et al.   SCIENCE

Antibiotic resistance in a very remote Amazonas community

(2008) Alessandro Bartoloni et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH

Antibiotics and Antibiotic Resistance Genes in Natural Environments

(2008) J. L. Martinez   SCIENCE