Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas
Authors
Keywords
-
Journal
Frontiers in Oncology
Volume 11, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2021-07-28
DOI
10.3389/fonc.2021.700568
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- CRISPR technologies for precise epigenome editing
- (2021) Muneaki Nakamura et al. NATURE CELL BIOLOGY
- Breast tumours maintain a reservoir of subclonal diversity during expansion
- (2021) Darlan C. Minussi et al. NATURE
- Patterns of somatic structural variation in human cancer genomes
- (2020) Yilong Li et al. NATURE
- Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
- (2020) Isidro Cortés-Ciriano et al. NATURE GENETICS
- Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer
- (2020) Kadir C. Akdemir et al. NATURE GENETICS
- Genomic characterization of human brain metastases identifies drivers of metastatic lung adenocarcinoma
- (2020) David J. H. Shih et al. NATURE GENETICS
- Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations
- (2019) Gaetano Ivan Dellino et al. NATURE GENETICS
- Principles of genome folding into topologically associating domains
- (2019) Quentin Szabo et al. Science Advances
- Spatial Chromosome Folding and Active Transcription Drive DNA Fragility and Formation of Oncogenic MLL Translocations
- (2019) Henrike Johanna Gothe et al. MOLECULAR CELL
- Context is everything: aneuploidy in cancer
- (2019) Uri Ben-David et al. NATURE REVIEWS GENETICS
- Pan-cancer whole-genome analyses of metastatic solid tumours
- (2019) Peter Priestley et al. NATURE
- The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact
- (2019) Lisanne F. van Dessel et al. Nature Communications
- CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples
- (2019) Xiaolu Zhang et al. Nature Communications
- Exome sequencing of primary breast cancers with paired metastatic lesions reveals metastasis-enriched mutations in the A-kinase anchoring protein family (AKAPs)
- (2018) Una Kjällquist et al. BMC CANCER
- Mutation profiling of key cancer genes in primary breast cancers and their distant metastases
- (2018) Willemijne AME Schrijver et al. CANCER RESEARCH
- Evolution of Barrett’s esophagus through space and time at single-crypt and whole-biopsy levels
- (2018) Pierre Martinez et al. Nature Communications
- Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas
- (2018) Theo A. Knijnenburg et al. Cell Reports
- Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
- (2018) Franz X. Schaub et al. Cell Systems
- Characteristics of The Cancer Genome Atlas cases relative to U.S. general population cancer cases
- (2018) Xiaoyan Wang et al. BRITISH JOURNAL OF CANCER
- Proteogenomic characterization and comprehensive integrative genomic analysis of human colorectal cancer liver metastasis
- (2018) Yu-Shui Ma et al. Molecular Cancer
- Endogenous DNA Double-Strand Breaks during DNA Transactions: Emerging Insights and Methods for Genome-Wide Profiling
- (2018) Britta A. M. Bouwman et al. Genes
- MP39-02 COMPARATIVE GENOMIC PROFILING OF MATCHED PRIMARY AND METASTATIC TUMORS IN RENAL CELL CARCINOMA
- (2017) Maria Becerra et al. JOURNAL OF UROLOGY
- DNA copy number changes define spatial patterns of heterogeneity in colorectal cancer
- (2017) Soulafa Mamlouk et al. Nature Communications
- BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks
- (2017) Winston X. Yan et al. Nature Communications
- DNA Breaks and End Resection Measured Genome-wide by End Sequencing
- (2016) Andres Canela et al. MOLECULAR CELL
- A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
- (2016) Faiyaz Notta et al. NATURE
- Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
- (2016) Joachim Weischenfeldt et al. NATURE GENETICS
- Punctuated copy number evolution and clonal stasis in triple-negative breast cancer
- (2016) Ruli Gao et al. NATURE GENETICS
- Single-cell genome sequencing: current state of the science
- (2016) Charles Gawad et al. NATURE REVIEWS GENETICS
- Genomic landscape of DNA repair genes in cancer
- (2016) Young Kwang Chae et al. Oncotarget
- The evolutionary history of lethal metastatic prostate cancer
- (2015) Gunes Gundem et al. NATURE
- A Big Bang model of human colorectal tumor growth
- (2015) Andrea Sottoriva et al. NATURE GENETICS
- Subclonal diversification of primary breast cancer revealed by multiregion sequencing
- (2015) Lucy R Yates et al. NATURE MEDICINE
- Short- and long-term effects of chromosome mis-segregation and aneuploidy
- (2015) Stefano Santaguida et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The Genetic Evolution of Melanoma from Precursor Lesions
- (2015) A. Hunter Shain et al. NEW ENGLAND JOURNAL OF MEDICINE
- Remarkable similarities of chromosomal rearrangements between primary human breast cancers and matched distant metastases as revealed by whole-genome sequencing
- (2015) Man-Hung Eric Tang et al. Oncotarget
- Large transcription units unify copy number variants and common fragile sites arising under replication stress
- (2014) Thomas E. Wilson et al. GENOME RESEARCH
- Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution
- (2014) Peter Eirew et al. NATURE
- Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing
- (2014) Marco Gerlinger et al. NATURE GENETICS
- Comparative Genomic Analysis of Primary and Synchronous Metastatic Colorectal Cancers
- (2014) Sun Young Lee et al. PLoS One
- Spatial and temporal diversity in genomic instability processes defines lung cancer evolution
- (2014) E. C. de Bruin et al. SCIENCE
- Patient-Derived Xenograft Models: An Emerging Platform for Translational Cancer Research
- (2014) M. Hidalgo et al. Cancer Discovery
- Pan-cancer patterns of somatic copy number alteration
- (2013) Travis I Zack et al. NATURE GENETICS
- Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing
- (2013) Nicola Crosetto et al. NATURE METHODS
- Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics
- (2013) A. Sottoriva et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High order chromatin architecture shapes the landscape of chromosomal alterations in cancer
- (2011) Geoff Fudenberg et al. NATURE BIOTECHNOLOGY
- Treatment of HER2-positive breast cancer: current status and future perspectives
- (2011) Carlos L. Arteaga et al. Nature Reviews Clinical Oncology
- Hydroxyurea induces de novo copy number variants in human cells
- (2011) M. F. Arlt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Replication Stress Induces Genome-wide Copy Number Changes in Human Cells that Resemble Polymorphic and Pathogenic Variants
- (2009) Martin F. Arlt et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Mechanisms of change in gene copy number
- (2009) P. J. Hastings et al. NATURE REVIEWS GENETICS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started