The dynamic broad epigenetic (H3K4me3, H3K27ac) domain as a mark of essential genes
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Title
The dynamic broad epigenetic (H3K4me3, H3K27ac) domain as a mark of essential genes
Authors
Keywords
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Journal
Clinical Epigenetics
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-07-08
DOI
10.1186/s13148-021-01126-1
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Note: Only part of the references are listed.- The Cxxc1 subunit of the Trithorax complex directs epigenetic licensing of CD4+ T cell differentiation
- (2021) Masahiro Kiuchi et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Anomalous collapses of Nares Strait ice arches leads to enhanced export of Arctic sea ice
- (2021) G. W. K. Moore et al. Nature Communications
- Nicotinamide N-methyltransferase: At the crossroads between cellular metabolism and epigenetic regulation
- (2021) Annalisa Roberti et al. Molecular Metabolism
- Minireview: Effect of the ketogenic diet in excitable tissues
- (2021) Carmen Murano et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Co-condensation between transcription factor and coactivator p300 modulates transcriptional bursting kinetics
- (2021) Liang Ma et al. MOLECULAR CELL
- Integrative pan cancer analysis reveals epigenomic variation in cancer type and cell specific chromatin domains
- (2021) Lijin K. Gopi et al. Nature Communications
- Profiling single-cell histone modifications using indexing chromatin immunocleavage sequencing
- (2021) Wai Lim Ku et al. GENOME RESEARCH
- Dynamic of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes
- (2021) Mohamed Belhocine et al. GENOME RESEARCH
- Broad domains of histone H3 lysine 4 trimethylation in transcriptional regulation and disease
- (2020) Shinae Park et al. FEBS Journal
- Publisher Correction: ChromID identifies the protein interactome at chromatin marks
- (2020) Rodrigo Villaseñor et al. NATURE BIOTECHNOLOGY
- Cancer-specific mutation of GATA3 disrupts the transcriptional regulatory network governed by Estrogen Receptor alpha, FOXA1 and GATA3
- (2020) Motoki Takaku et al. NUCLEIC ACIDS RESEARCH
- H2B ubiquitylation enhances H3K4 methylation activities of human KMT2 family complexes
- (2020) Minjung Kwon et al. NUCLEIC ACIDS RESEARCH
- Insights on the regulation of the MLL/SET1 family histone methyltransferases
- (2020) Liang Sha et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Genomic landscape of transcriptionally active histone arginine methylation marks, H3R2me2s and H4R3me2a, relative to nucleosome depleted regions
- (2020) Tasnim H. Beacon et al. GENE
- Single-molecule regulatory architectures captured by chromatin fiber sequencing
- (2020) Andrew B. Stergachis et al. SCIENCE
- Development and validation of a hypoxia‑related prognostic signature for breast cancer
- (2020) Jianxin Wang et al. Oncology Letters
- Coordinated regulation of cellular identity–associated H3K4me3 breadth by the COMPASS family
- (2020) Christie C. Sze et al. Science Advances
- New insights into the activities and toxicities of the old anticancer drug doxorubicin
- (2020) Sabina Y. van der Zanden et al. FEBS Journal
- Epigenetic regulation of ACE2, the receptor of the SARS-CoV-2 virus
- (2020) Tasnim BEACON et al. GENOME
- Molecular basis for histone H3 “K4me3-K9me3/2” methylation pattern readout by Spindlin1
- (2020) Fan Zhao et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- An H3K4me3 reader, BAP18 as an adaptor of COMPASS-like core subunits co-activates ERα action and associates with the sensitivity of antiestrogen in breast cancer
- (2020) Ge Sun et al. NUCLEIC ACIDS RESEARCH
- Aberrant Activity of Histone–Lysine N-Methyltransferase 2 (KMT2) Complexes in Oncogenesis
- (2020) Elzbieta Poreba et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Histone Variant H3.3 Mutations in Defining the Chromatin Function in Mammals
- (2020) Matteo Trovato et al. Cells
- The Integrator complex at the crossroad of coding and noncoding RNA
- (2020) Nina Kirstein et al. CURRENT OPINION IN CELL BIOLOGY
- Histone H3 lysine K4 methylation and its role in learning and memory
- (2019) Bridget E. Collins et al. Epigenetics & Chromatin
- Coexpression patterns define epigenetic regulators associated with neurological dysfunction
- (2019) Leandros Boukas et al. GENOME RESEARCH
- Broad domains of histone 3 lysine 4 trimethylation are associated with transcriptional activation in CA1 neurons of the hippocampus during memory formation
- (2019) Bridget E. Collins et al. NEUROBIOLOGY OF LEARNING AND MEMORY
- Commonly integrated epigenetic modifications of differentially expressed genes lead to adaptive resistance in cancer
- (2019) Abdullah Al Emran et al. Epigenomics
- Atypical chromatin structure of immune-related genes expressed in chicken erythrocytes
- (2019) Sanzida Jahan et al. Biochemistry and Cell Biology
- Identification of factors associated with duplicate rate in ChIP-seq data
- (2019) Shulan Tian et al. PLoS One
- Mediator complex interaction partners organize the transcriptional network that defines neural stem cells
- (2019) Marti Quevedo et al. Nature Communications
- Mediator Condensates Localize Signaling Factors to Key Cell Identity Genes
- (2019) Alicia V. Zamudio et al. MOLECULAR CELL
- Decreased Enhancer-Promoter Proximity Accompanying Enhancer Activation
- (2019) Nezha S. Benabdallah et al. MOLECULAR CELL
- Epigenetic initiation of the TH17 differentiation program is promoted by Cxxc finger protein 1
- (2019) Feng Lin et al. Science Advances
- Biological Functions of the ING Proteins
- (2019) Arthur Dantas et al. Cancers
- PRMT1 Is Required for the Maintenance of Mature β-Cell Identity
- (2019) Hyunki Kim et al. DIABETES
- Time-Resolved Analysis Reveals Rapid Dynamics and Broad Scope of the CBP/p300 Acetylome
- (2018) Brian T. Weinert et al. CELL
- MLL4 Is Required to Maintain Broad H3K4me3 Peaks and Super-Enhancers at Tumor Suppressor Genes
- (2018) Shilpa S. Dhar et al. MOLECULAR CELL
- MSK1 regulates luminal cell differentiation and metastatic dormancy in ER+ breast cancer
- (2018) Sylwia Gawrzak et al. NATURE CELL BIOLOGY
- Enhancer mapping uncovers phenotypic heterogeneity and evolution in patients with luminal breast cancer
- (2018) Darren K. Patten et al. NATURE MEDICINE
- Coactivator condensation at super-enhancers links phase separation and gene control
- (2018) Benjamin R. Sabari et al. SCIENCE
- Interchromosomal interactions: A genomic love story of kissing chromosomes
- (2018) Philipp G. Maass et al. JOURNAL OF CELL BIOLOGY
- Examining the Roles of H3K4 Methylation States with Systematically Characterized Antibodies
- (2018) Rohan N. Shah et al. MOLECULAR CELL
- Phase Separation and Transcription Regulation: Are Super-Enhancers and Locus Control Regions Primary Sites of Transcription Complex Assembly?
- (2018) Aishwarya Gurumurthy et al. BIOESSAYS
- KDM5 Histone Demethylase Activity Links Cellular Transcriptomic Heterogeneity to Therapeutic Resistance
- (2018) Kunihiko Hinohara et al. CANCER CELL
- CpG binding protein (CFP1) occupies open chromatin regions of active genes, including enhancers and non-CpG islands
- (2018) Louie N. van de Lagemaat et al. Epigenetics & Chromatin
- Oncohistones: drivers of pediatric cancers
- (2017) Faizaan Mohammad et al. GENES & DEVELOPMENT
- Integrator orchestrates RAS/ERK1/2 signaling transcriptional programs
- (2017) Jingyin Yue et al. GENES & DEVELOPMENT
- Mitogen-induced distinct epialleles are phosphorylated at either H3S10 or H3S28, depending on H3K27 acetylation
- (2017) Dilshad H. Khan et al. MOLECULAR BIOLOGY OF THE CELL
- Mll3 and Mll4 Facilitate Enhancer RNA Synthesis and Transcription from Promoters Independently of H3K4 Monomethylation
- (2017) Kristel M. Dorighi et al. MOLECULAR CELL
- The impact of cellular metabolism on chromatin dynamics and epigenetics
- (2017) Michael A. Reid et al. NATURE CELL BIOLOGY
- Is H3K4me1 at enhancers correlative or causative?
- (2017) Alvaro Rada-Iglesias NATURE GENETICS
- Chromatin-state discovery and genome annotation with ChromHMM
- (2017) Jason Ernst et al. Nature Protocols
- CHD1 regulates cell fate determination by activation of differentiation-induced genes
- (2017) Simon J. Baumgart et al. NUCLEIC ACIDS RESEARCH
- The Encyclopedia of DNA elements (ENCODE): data portal update
- (2017) Carrie A Davis et al. NUCLEIC ACIDS RESEARCH
- Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin
- (2017) Asa Thibodeau et al. Scientific Reports
- The SET1 Complex Selects Actively Transcribed Target Genes via Multivalent Interaction with CpG Island Chromatin
- (2017) David A. Brown et al. Cell Reports
- Super-Enhancers and Broad H3K4me3 Domains Form Complex Gene Regulatory Circuits Involving Chromatin Interactions
- (2017) Fan Cao et al. Scientific Reports
- Histone H3K4 trimethylation: dynamic interplay with pre-mRNA splicing
- (2016) James R. Davie et al. Biochemistry and Cell Biology
- Is H3K4me3 instructive for transcription activation?
- (2016) Françoise S. Howe et al. BIOESSAYS
- Detecting broad domains and narrow peaks in ChIP-seq data with hiddenDomains
- (2016) Joshua Starmer et al. BMC BIOINFORMATICS
- Suppression of Spry4 enhances cancer stem cell properties of human MDA-MB-231 breast carcinoma cells
- (2016) Hongyu Jing et al. Cancer Cell International
- RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription
- (2016) Laura Baranello et al. CELL
- Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes
- (2016) Sakthi D. Moorthy et al. GENOME RESEARCH
- SET/MLL family proteins in hematopoiesis and leukemia
- (2016) Weiwei Yang et al. INTERNATIONAL JOURNAL OF HEMATOLOGY
- Chromatin Kinases Act on Transcription Factors and Histone Tails in Regulation of Inducible Transcription
- (2016) Steven Z. Josefowicz et al. MOLECULAR CELL
- Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping
- (2016) Caroline R. Bartman et al. MOLECULAR CELL
- Writing of H3K4Me3 overcomes epigenetic silencing in a sustained but context-dependent manner
- (2016) David Cano-Rodriguez et al. Nature Communications
- The epigenetic modifier JMJD6 is amplified in mammary tumors and cooperates with c-Myc to enhance cellular transformation, tumor progression, and metastasis
- (2016) Olga Aprelikova et al. Clinical Epigenetics
- Computational inference of H3K4me3 and H3K27ac domain length
- (2016) Julian Zubek et al. PeerJ
- The impact of amplification on differential expression analyses by RNA-seq
- (2016) Swati Parekh et al. Scientific Reports
- histoneHMM: Differential analysis of histone modifications with broad genomic footprints
- (2015) Matthias Heinig et al. BMC BIOINFORMATICS
- Biochemical Reconstitution and Phylogenetic Comparison of Human SET1 Family Core Complexes Involved in Histone Methylation
- (2015) Stephen A. Shinsky et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- High Fractional Occupancy of a Tandem MARE and its Role in Long-Range β-globin Gene Regulation
- (2015) Jared R. Stees et al. MOLECULAR AND CELLULAR BIOLOGY
- Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes
- (2015) Kaifu Chen et al. NATURE GENETICS
- Transcription-coupled recruitment of human CHD1 and CHD2 influences chromatin accessibility and histone H3 and H3.3 occupancy at active chromatin regions
- (2015) Lee Siggens et al. Epigenetics & Chromatin
- Deciphering H3K4me3 broad domains associated with gene-regulatory networks and conserved epigenomic landscapes in the human brain
- (2015) A Dincer et al. Translational Psychiatry
- H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
- (2014) Bérénice A. Benayoun et al. CELL
- Chd1 is essential for the high transcriptional output and rapid growth of the mouse epiblast
- (2014) M. Guzman-Ayala et al. DEVELOPMENT
- Extreme HOT regions are CpG-dense promoters in C. elegans and humans
- (2014) R. A.- J. Chen et al. GENOME RESEARCH
- Chd1 co-localizes with early transcription elongation factors independently of H3K36 methylation and releases stalled RNA polymerase II at introns
- (2014) Daechan Park et al. Epigenetics & Chromatin
- Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data
- (2014) Thomas S. Carroll et al. Frontiers in Genetics
- BroadPeak: a novel algorithm for identifying broad peaks in diffuse ChIP-seq datasets
- (2013) Jianrong Wang et al. BIOINFORMATICS
- SET1 and p300 Act Synergistically, through Coupled Histone Modifications, in Transcriptional Activation by p53
- (2013) Zhanyun Tang et al. CELL
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- ING1 and ING2: multifaceted tumor suppressor genes
- (2013) Claire Guérillon et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Doxorubicin Enhances Nucleosome Turnover around Promoters
- (2013) Fan Yang et al. CURRENT BIOLOGY
- Multiplex mapping of chromatin accessibility and DNA methylation within targeted single molecules identifies epigenetic heterogeneity in neural stem cells and glioblastoma
- (2013) N. H. Nabilsi et al. GENOME RESEARCH
- Quantitative Dissection and Stoichiometry Determination of the Human SET1/MLL Histone Methyltransferase Complexes
- (2013) R. van Nuland et al. MOLECULAR AND CELLULAR BIOLOGY
- Enhancers: five essential questions
- (2013) Len A. Pennacchio et al. NATURE REVIEWS GENETICS
- RNA-dependent dynamic histone acetylation regulates MCL1 alternative splicing
- (2013) Dilshad H. Khan et al. NUCLEIC ACIDS RESEARCH
- Drug-induced histone eviction from open chromatin contributes to the chemotherapeutic effects of doxorubicin
- (2013) Baoxu Pang et al. Nature Communications
- Transcription factories: genetic programming in three dimensions
- (2012) Lucas Brandon Edelman et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Sprouty Proteins Are Negative Regulators of Interferon (IFN) Signaling and IFN-inducible Biological Responses
- (2012) Bhumika Sharma et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The adjustable nucleosome: an epigenetic signaling module
- (2012) Bryan M. Turner TRENDS IN GENETICS
- First Exon Length Controls Active Chromatin Signatures and Transcription
- (2012) Nicole I. Bieberstein et al. Cell Reports
- Identifying dispersed epigenomic domains from ChIP-Seq data
- (2011) Qiang Song et al. BIOINFORMATICS
- Ultrastructural study of transcription factories in mouse erythroblasts
- (2011) C. H. Eskiw et al. JOURNAL OF CELL SCIENCE
- Dynamic acetylation of all lysine-4 trimethylated histone H3 is evolutionarily conserved and mediated by p300/CBP
- (2011) N. T. Crump et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions
- (2011) Naim U Rashid et al. GENOME BIOLOGY
- H4R3 methylation facilitates -globin transcription by regulating histone acetyltransferase binding and H3 acetylation
- (2010) X. Li et al. BLOOD
- A unique H3K4me2 profile marks tissue-specific gene regulation
- (2010) A. Pekowska et al. GENOME RESEARCH
- Conserved role of intragenic DNA methylation in regulating alternative promoters
- (2010) Alika K. Maunakea et al. NATURE
- Evaluation of Algorithm Performance in ChIP-Seq Peak Detection
- (2010) Elizabeth G. Wilbanks et al. PLoS One
- A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
- (2009) Chongzhi Zang et al. BIOINFORMATICS
- Hidden Markov Models and their Applications in Biological Sequence Analysis
- (2009) Byung-Jun Yoon CURRENT GENOMICS
- Molecular Regulation of H3K4 Trimethylation by Wdr82, a Component of Human Set1/COMPASS
- (2008) M. Wu et al. MOLECULAR AND CELLULAR BIOLOGY
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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