The Encyclopedia of DNA elements (ENCODE): data portal update

The 4D nucleome project

(2017) Job Dekker et al.   NATURE

SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata

(2017) Benjamin C. Hitz et al.   PLoS One

Ensembl 2017

(2016) Bronwen L. Aken et al.   NUCLEIC ACIDS RESEARCH

Principles of metadata organization at the ENCODE data coordination center

(2016) Eurie L. Hong et al.   Database-The Journal of Biological Databases and Curation

The International Human Epigenome Consortium Data Portal

(2016) David Bujold et al.   Cell Systems

Reproducibility crisis: Blame it on the antibodies

(2015) Monya Baker   NATURE

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

ClinGen — The Clinical Genome Resource

(2015) Heidi L. Rehm et al.   NEW ENGLAND JOURNAL OF MEDICINE

ENCODE data at the ENCODE portal

(2015) Cricket A. Sloan et al.   NUCLEIC ACIDS RESEARCH

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser

(2013) B. J. Raney et al.   BIOINFORMATICS

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

An encyclopedia of mouse DNA elements (Mouse ENCODE)

(2012) et al.   GENOME BIOLOGY

Dalliance: interactive genome viewing on the web

(2011) T. A. Down et al.   BIOINFORMATICS

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

(2010) et al.   SCIENCE

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

(2010) M. B. Gerstein et al.   SCIENCE

ENCODE whole-genome data in the UCSC Genome Browser

(2009) K. R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH