Iron Oxidation by a Fused Cytochrome-Porin Common to Diverse Iron-Oxidizing Bacteria

Ligand Effects on Biotic and Abiotic Fe(II) Oxidation by the Microaerophile Sideroxydans lithotrophicus

(2021) Nanqing Zhou et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies

(2020) Arkadiy I. Garber et al.   Frontiers in Microbiology

Validating the Cyc2 Neutrophilic Iron Oxidation Pathway Using Meta-omics of Zetaproteobacteria Iron Mats at Marine Hydrothermal Vents

(2020) Sean M. McAllister et al.   mSystems

The Crystal Structure of a Biological Insulated Transmembrane Molecular Wire

(2020) Marcus J. Edwards et al.   CELL

Iroki: automatic customization and visualization of phylogenetic trees

(2020) Ryan M. Moore et al.   PeerJ

Mixotrophic Iron-Oxidizing Thiomonas Isolates from an Acid Mine Drainage-Affected Creek

(2020) Denise M. Akob et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Aerobic and anaerobic iron oxidizers together drive denitrification and carbon cycling at marine iron-rich hydrothermal vents

(2020) Sean M. McAllister et al.   ISME Journal

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

The PSIPRED Protein Analysis Workbench: 20 years on

(2019) Daniel W A Buchan et al.   NUCLEIC ACIDS RESEARCH

Photoferrotrophs Produce a PioAB Electron Conduit for Extracellular Electron Uptake

(2019) Dinesh Gupta et al.   mBio

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

(2018) Lukas Zimmermann et al.   JOURNAL OF MOLECULAR BIOLOGY

Iron targeted transcriptome study draws attention to novel redox protein candidates involved in ferrous iron oxidation in “ Ferrovum ” sp. JA12

(2018) Sophie R. Ullrich et al.   RESEARCH IN MICROBIOLOGY

Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov., sp. nov.

(2017) Jiro F Mori et al.   ISME Journal

Hidden diversity revealed by genome-resolved metagenomics of iron-oxidizing microbial mats from Lō’ihi Seamount, Hawai’i

(2017) Heather Fullerton et al.   ISME Journal

High reactivity of deep biota under anthropogenic CO2 injection into basalt

(2017) Rosalia Trias et al.   Nature Communications

Comparative Genomic Analysis of Neutrophilic Iron(II) Oxidizer Genomes for Candidate Genes in Extracellular Electron Transfer

(2017) Shaomei He et al.   Frontiers in Microbiology

Novel Pelagic Iron-Oxidizing Zetaproteobacteria from the Chesapeake Bay Oxic–Anoxic Transition Zone

(2017) Beverly K. Chiu et al.   Frontiers in Microbiology

Metagenomic Analyses of the Autotrophic Fe(II)-Oxidizing, Nitrate-Reducing Enrichment Culture KS

(2016) Shaomei He et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Heme Trafficking and Modifications during System I Cytochrome c Biogenesis: Insights from Heme Redox Potentials of Ccm Proteins

(2016) Molly C. Sutherland et al.   BIOCHEMISTRY

Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer

(2016) Talia N M Jewell et al.   ISME Journal

From Constructs to Crystals – Towards Structure Determination of β-barrel Outer Membrane Proteins

(2016) Nicholas Noinaj et al.   Jove-Journal of Visualized Experiments

New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph

(2015) Roman A. Barco et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structure, Dynamics, and Substrate Specificity of the OprO Porin from Pseudomonas aeruginosa

(2015) Niraj Modi et al.   BIOPHYSICAL JOURNAL

The Role of FeOB in Engineered Water Ecosystems: A Review

(2015) David Emerson et al.   JOURNAL AMERICAN WATER WORKS ASSOCIATION

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria

(2015) Shingo Kato et al.   Frontiers in Microbiology

Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth

(2015) Christopher R. Beckwith et al.   Frontiers in Microbiology

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A simple method for the determination of reduction potentials in heme proteins

(2014) Igor Efimov et al.   FEBS LETTERS

Unraveling the Stratification of an Iron-Oxidizing Microbial Mat by Metatranscriptomics

(2014) Achim Quaiser et al.   PLoS One

Fe(II) Oxidation Is an Innate Capability of Nitrate-Reducing Bacteria That Involves Abiotic and Biotic Reactions

(2013) H. K. Carlson et al.   JOURNAL OF BACTERIOLOGY

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

(2013) David Emerson et al.   Frontiers in Microbiology

Mtr extracellular electron-transfer pathways in Fe(III)-reducing or Fe(II)-oxidizing bacteria: a genomic perspective

(2012) Liang Shi et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Insight into the evolution of the iron oxidation pathways

(2012) Marianne Ilbert et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Redox Transformations of Iron at Extremely Low pH: Fundamental and Applied Aspects

(2012) D. Barrie Johnson et al.   Frontiers in Microbiology

Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1

(2012) Juan Liu et al.   Frontiers in Microbiology

β-Barrel Membrane Protein Assembly by the Bam Complex

(2011) Christine L. Hagan et al.   Annual Review of Biochemistry

High-resolution 2D and 3D cryo-TEM reveals structural adaptations of two stalk-forming bacteria to an Fe-oxidizing lifestyle

(2011) Luis R. Comolli et al.   ENVIRONMENTAL MICROBIOLOGY

The iron-oxidizing proteobacteria

(2011) S. Hedrich et al.   MICROBIOLOGY-SGM

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

(2011) Esther Singer et al.   PLoS One

Bioenergetic challenges of microbial iron metabolisms

(2011) Lina J. Bird et al.   TRENDS IN MICROBIOLOGY

Iron-Oxidizing Bacteria: An Environmental and Genomic Perspective

(2010) David Emerson et al.   Annual Review of Microbiology

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

(2010) Clara S Chan et al.   ISME Journal

Co-expression of ferrochelatase allows for complete heme incorporation into recombinant proteins produced in E. coli

(2010) Jawahar Sudhamsu et al.   PROTEIN EXPRESSION AND PURIFICATION

Cytochrome c biogenesis: the Ccm system

(2010) Carsten Sanders et al.   TRENDS IN MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Biogeochemical Redox Processes and their Impact on Contaminant Dynamics

(2009) Thomas Borch et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Electrochemical Measurement of Electron Transfer Kinetics byShewanella oneidensisMR-1

(2009) Daniel Baron et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community

(2008) Chris Jeans et al.   ISME Journal

A New Iron-oxidizing/O2-reducing Supercomplex Spanning Both Inner and Outer Membranes, Isolated from the Extreme AcidophileAcidithiobacillus ferrooxidans

(2008) Cindy Castelle et al.   JOURNAL OF BIOLOGICAL CHEMISTRY