Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer

Large Fractions of CO2-Fixing Microorganisms in Pristine Limestone Aquifers Appear To Be Involved in the Oxidation of Reduced Sulfur and Nitrogen Compounds

(2015) Martina Herrmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph

(2015) Roman A. Barco et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomics meets time series analysis: unraveling microbial community dynamics

(2015) Karoline Faust et al.   CURRENT OPINION IN MICROBIOLOGY

Bicarbonate impact on U(VI) bioreduction in a shallow alluvial aquifer

(2015) Philip E. Long et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing

(2015) Anna Kopf et al.   Marine Genomics

ConStrains identifies microbial strains in metagenomic datasets

(2015) Chengwei Luo et al.   NATURE BIOTECHNOLOGY

Diverse uncultivated ultra-small bacterial cells in groundwater

(2015) Birgit Luef et al.   Nature Communications

Microbial sulfur transformations in sediments from Subglacial Lake Whillans

(2015) Alicia M. Purcell et al.   Frontiers in Microbiology

The “bacterial heterodisulfide” DsrC is a key protein in dissimilatory sulfur metabolism

(2014) S.S. Venceslau et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

The complete genome sequence for putative H2- and S-oxidizerCandidatusSulfuricurvum sp., assembledde novofrom an aquifer-derived metagenome

(2014) Kim M. Handley et al.   ENVIRONMENTAL MICROBIOLOGY

Physiological characterization of anaerobic ammonium oxidizing bacterium ‘Candidatus Jettenia caeni’

(2014) Muhammad Ali et al.   ENVIRONMENTAL MICROBIOLOGY

Reduction of nitric oxide catalyzed by hydroxylamine oxidoreductase from an anammox bacterium

(2014) Tatsuya Irisa et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Unraveling the Stratification of an Iron-Oxidizing Microbial Mat by Metatranscriptomics

(2014) Achim Quaiser et al.   PLoS One

Competition for Ammonia Influences the Structure of Chemotrophic Communities in Geothermal Springs

(2013) Trinity L. Hamilton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structural Basis of Biological NO Generation by Octaheme Oxidoreductases

(2013) Wouter J. Maalcke et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Persistence of uranium groundwater plumes: Contrasting mechanisms at two DOE sites in the groundwater–river interaction zone

(2013) John M. Zachara et al.   JOURNAL OF CONTAMINANT HYDROLOGY

Field evidence of selenium bioreduction in a uranium-contaminated aquifer

(2013) Kenneth H. Williams et al.   Environmental Microbiology Reports

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

(2013) David Emerson et al.   Frontiers in Microbiology

Insight into the evolution of the iron oxidation pathways

(2012) Marianne Ilbert et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Inhibition of anaerobic ammonium oxidizing (anammox) enrichment cultures by substrates, metabolites and common wastewater constituents

(2012) José M. Carvajal-Arroyo et al.   CHEMOSPHERE

Vertical migration and distribution of added dissolved iron in Carex lasiocarpa marsh soil

(2012) Yuan-chun Zou et al.   ECOLOGICAL ENGINEERING

High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment

(2012) Kim M. Handley et al.   FEMS MICROBIOLOGY ECOLOGY

Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization

(2012) I. Sharon et al.   GENOME RESEARCH

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs

(2012) Ryan A Lesniewski et al.   ISME Journal

Genetic Evidence for Bacterial Chemolithoautotrophy Based on the Reductive Tricarboxylic Acid Cycle in Groundwater Systems

(2012) Albin Alfreider et al.   MICROBES AND ENVIRONMENTS

The effect of sulfide inhibition on the ANAMMOX process

(2012) Ren-Cun Jin et al.   WATER RESEARCH

Ecological Aspects of the Distribution of Different Autotrophic CO2Fixation Pathways

(2011) Ivan A. Berg   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Acetate Availability and its Influence on Sustainable Bioremediation of Uranium-Contaminated Groundwater

(2011) Kenneth H. Williams et al.   GEOMICROBIOLOGY JOURNAL

Relative influences of DOC flux and subterranean fauna on microbial abundance and activity in aquifer sediments: new insights from 13C-tracer experiments

(2010) ARNAUD FOULQUIER et al.   FRESHWATER BIOLOGY

Anammox Bacterial Diversity in Various Aquatic Ecosystems Based on the Detection of Hydrazine Oxidase Genes (hzoA/hzoB)

(2010) Matthew D. Hirsch et al.   MICROBIAL ECOLOGY

Composition and Activity of an Autotrophic Fe(II)-Oxidizing, Nitrate-Reducing Enrichment Culture

(2009) M. Blothe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Detection and Quantification of Bacteria Involved in Aerobic and Anaerobic Ammonium Oxidation in an Ammonium-Contaminated Aquifer

(2009) Theo H. M. Smits et al.   BIOREMEDIATION JOURNAL

Biochemistry and molecular biology of anammox bacteria

(2009) Mike S. M. Jetten et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Distribution and diversity of autotrophic bacteria in groundwater systems based on the analysis of RubisCO genotypes

(2009) Albin Alfreider et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation

(2008) Regina A. O'Neil et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptional activity of paddy soil bacterial communities

(2008) Pravin Malla Shrestha et al.   ENVIRONMENTAL MICROBIOLOGY

Origin and Fate of Industrial Ammonium in Anoxic Ground Water-15N Evidence for Anaerobic Oxidation (Anammox)

(2008) Ian Clark et al.   GROUND WATER MONITORING AND REMEDIATION

Another multiheme protein, hydroxylamine oxidoreductase, abundantly produced in an anammox bacterium besides the hydrazine-oxidizing enzyme

(2008) Munetaka Shimamura et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

(2008) Jack A. Gilbert et al.   PLoS One

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA