Hidden diversity revealed by genome-resolved metagenomics of iron-oxidizing microbial mats from Lō’ihi Seamount, Hawai’i

The role of microaerophilic Fe-oxidizing micro-organisms in producing banded iron formations

(2016) C. S. Chan et al.   Geobiology

Planktonic marine iron oxidizers drive iron mineralization under low-oxygen conditions

(2016) E. K. Field et al.   Geobiology

Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer

(2016) Talia N M Jewell et al.   ISME Journal

Discovery of a Novel Alginate Lyase fromNitratiruptorsp. SB155-2 Thriving at Deep-sea Hydrothermal Vents and Identification of the Residues Responsible for Its Heat Stability

(2016) Akira Inoue et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Quantitative PCR Analysis of Functional Genes in Iron-Rich Microbial Mats at an Active Hydrothermal Vent System (Lō'ihi Seamount, Hawai'i)

(2015) Kelsey J. Jesser et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph

(2015) Roman A. Barco et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Basin-scale transport of hydrothermal dissolved metals across the South Pacific Ocean

(2015) Joseph A. Resing et al.   NATURE

A global transition to ferruginous conditions in the early Neoproterozoic oceans

(2015) Romain Guilbaud et al.   Nature Geoscience

Microbial Iron Mats at the Mid-Atlantic Ridge and Evidence that Zetaproteobacteria May Be Restricted to Iron-Oxidizing Marine Systems

(2015) Jarrod J. Scott et al.   PLoS One

Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount

(2014) Erin K Field et al.   ISME Journal

Hidden in plain sight: discovery of sheath-forming, iron-oxidizingZetaproteobacteriaat Loihi Seamount, Hawaii, USA

(2013) Emily J. Fleming et al.   FEMS MICROBIOLOGY ECOLOGY

" Genome-enabled studies of anaerobic, nitrate-dependent iron oxidation in the chemolithoautotrophic bacterium Thiobacillus denitrificans"

(2013) Harry R. Beller et al.   Frontiers in Microbiology

Metagenomic insights into the dominant Fe(II) oxidizing Zetaproteobacteria from an iron mat at Lō´ihi, Hawai´l

(2013) Esther Singer et al.   Frontiers in Microbiology

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

(2013) David Emerson et al.   Frontiers in Microbiology

Insight into the evolution of the iron oxidation pathways

(2012) Marianne Ilbert et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Microbial diversity and potential for arsenic and iron biogeochemical cycling at an arsenic rich, shallow-sea hydrothermal vent (Tutum Bay, Papua New Guinea)

(2012) D'Arcy R. Meyer-Dombard et al.   CHEMICAL GEOLOGY

Draft Genome Sequence of the Sulfur-Oxidizing Bacterium "Candidatus Sulfurovum sediminum" AR, Which Belongs to the Epsilonproteobacteria

(2012) S.-J. Park et al.   JOURNAL OF BACTERIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Chemoautotrophy at Deep-Sea Vents: Past, Present, and Future

(2012) Stefan Sievert et al.   OCEANOGRAPHY

A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

(2012) John Christian Gaby et al.   PLoS One

Biodiversity and Emerging Biogeography of the Neutrophilic Iron-Oxidizing Zetaproteobacteria

(2011) Sean M. McAllister et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The iron-oxidizing proteobacteria

(2011) S. Hedrich et al.   MICROBIOLOGY-SGM

Microbiology of Seamounts: Common Patterns Observed in Community Structure

(2011) David Emerson et al.   OCEANOGRAPHY

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

(2011) Esther Singer et al.   PLoS One

Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean

(2010) Michael Hügler et al.   Annual Review of Marine Science

Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

(2010) Clara S Chan et al.   ISME Journal

Iron-oxidizing microbial ecosystems thrived in late Paleoproterozoic redox-stratified oceans

(2009) Noah Planavsky et al.   EARTH AND PLANETARY SCIENCE LETTERS

Redox Speciation and Distribution within Diverse Iron-dominated Microbial Habitats at Loihi Seamount

(2009) Brian T. Glazer et al.   GEOMICROBIOLOGY JOURNAL

Zeta-ProteobacteriaDominate the Colonization and Formation of Microbial Mats in Low-Temperature Hydrothermal Vents at Loihi Seamount, Hawaii

(2009) Allen C. Rassa et al.   GEOMICROBIOLOGY JOURNAL

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Low-oxygen and chemical kinetic constraints on the geochemical niche of neutrophilic iron(II) oxidizing microorganisms

(2008) Gregory K. Druschel et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

The cbb3 Oxidases Are an Ancient Innovation of the Domain Bacteria

(2008) A.-L. Ducluzeau et al.   MOLECULAR BIOLOGY AND EVOLUTION