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Title
The PSIPRED Protein Analysis Workbench: 20 years on
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-04-16
DOI
10.1093/nar/gkz297
References
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Related references
Note: Only part of the references are listed.- Programmatic access to bioinformatics tools from EMBL-EBI update: 2017
- (2017) Szymon Chojnacki et al. NUCLEIC ACIDS RESEARCH
- Improved protein contact predictions with the MetaPSICOV2 server in CASP12
- (2017) Daniel W A Buchan et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age
- (2017) Joerg Schaarschmidt et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
- (2016) Vikram Alva et al. NUCLEIC ACIDS RESEARCH
- Expansion of the Gene Ontology knowledgebase and resources
- (2016) NUCLEIC ACIDS RESEARCH
- InterPro in 2017—beyond protein family and domain annotations
- (2016) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- FFPred 3: feature-based function prediction for all Gene Ontology domains
- (2016) Domenico Cozzetto et al. Scientific Reports
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- CCMpred—fast and precise prediction of protein residue–residue contacts from correlated mutations
- (2014) Stefan Seemayer et al. BIOINFORMATICS
- MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
- (2014) David T. Jones et al. BIOINFORMATICS
- DISOPRED3: precise disordered region predictions with annotated protein-binding activity
- (2014) David T. Jones et al. BIOINFORMATICS
- FreeContact: fast and free software for protein contact prediction from residue co-evolution
- (2014) László Kaján et al. BMC BIOINFORMATICS
- GenBank
- (2014) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
- Membrane protein orientation and refinement using a knowledge-based statistical potential
- (2013) Timothy Nugent et al. BMC BIOINFORMATICS
- Scalable web services for the PSIPRED Protein Analysis Workbench
- (2013) Daniel W. A. Buchan et al. NUCLEIC ACIDS RESEARCH
- ExPASy: SIB bioinformatics resource portal
- (2012) P. Artimo et al. NUCLEIC ACIDS RESEARCH
- The MEMPACK alpha-helical transmembrane protein structure prediction server
- (2011) T. Nugent et al. BIOINFORMATICS
- PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
- (2011) David T. Jones et al. BIOINFORMATICS
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- Predictions of Hot Spot Residues at Protein-Protein Interfaces Using Support Vector Machines
- (2011) Stefano Lise et al. PLoS One
- Predicting Transmembrane Helix Packing Arrangements using Residue Contacts and a Force-Directed Algorithm
- (2010) Timothy Nugent et al. PLoS Computational Biology
- pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination
- (2009) Anna Lobley et al. BIOINFORMATICS
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