Integration of chemically modified nucleotides with DNA strand displacement reactions for applications in living systems
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Title
Integration of chemically modified nucleotides with
DNA
strand displacement reactions for applications in living systems
Authors
Keywords
-
Journal
Wiley Interdisciplinary Reviews-Nanomedicine and Nanobiotechnology
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2021-07-30
DOI
10.1002/wnan.1743
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Related references
Note: Only part of the references are listed.- Nuclease resistance of DNA nanostructures
- (2021) Arun Richard Chandrasekaran Nature Reviews Chemistry
- l-DNA-Based Catalytic Hairpin Assembly Circuit
- (2020) Adam M. Kabza et al. MOLECULES
- DNA Strand Displacement Reaction: A Powerful Tool for Discriminating Single Nucleotide Variants
- (2020) Weiyang Tang et al. Topics in Current Chemistry
- Generating Biologically Stable TNA Aptamers that Function with High Affinity and Thermal Stability
- (2020) Matthew R. Dunn et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Phosphorothioate modified oligonucleotide–protein interactions
- (2020) Stanley T Crooke et al. NUCLEIC ACIDS RESEARCH
- The powerful world of antisense oligonucleotides: From bench to bedside
- (2020) Anaïs M. Quemener et al. Wiley Interdisciplinary Reviews-RNA
- Synthesis and polymerase recognition of a pyrrolocytidine TNA triphosphate
- (2020) Hui Mei et al. BIOPOLYMERS
- Immune Sensing Mechanisms that Discriminate Self from Altered Self and Foreign Nucleic Acids
- (2020) Eva Bartok et al. IMMUNITY
- Advances in oligonucleotide drug delivery
- (2020) Thomas C. Roberts et al. NATURE REVIEWS DRUG DISCOVERY
- Robust Heterochiral Strand Displacement Using Leakless Translators
- (2020) Tracy L. Mallette et al. ACS Synthetic Biology
- Understanding DNA interactions in crowded environments with a coarse-grained model
- (2020) Fan Hong et al. NUCLEIC ACIDS RESEARCH
- Live cell PNA labelling enables erasable fluorescence imaging of membrane proteins
- (2020) Georgina C. Gavins et al. Nature Chemistry
- Direct Comparison of d-DNA and l-DNA Strand-Displacement Reactions in Living Mammalian Cells
- (2020) Wenrui Zhong et al. ACS Synthetic Biology
- Mirror-Image Gene Transcription and Reverse Transcription
- (2019) Min Wang et al. Chem
- A Mirror Image Fluorogenic Aptamer Sensor for Live-Cell Imaging of MicroRNAs
- (2019) Wenrui Zhong et al. ACS Sensors
- Mirror‐Image Oligonucleotides: History and Emerging Applications
- (2019) Brian E. Young et al. CHEMISTRY-A EUROPEAN JOURNAL
- A Novel Synthetic Toehold Switch for MicroRNA Detection in Mammalian Cells
- (2019) Shue Wang et al. ACS Synthetic Biology
- Nucleic‐Acid Structures as Intracellular Probes for Live Cells
- (2019) Devleena Samanta et al. ADVANCED MATERIALS
- DNA nanotechnology approaches for microRNA detection and diagnosis
- (2019) Arun Richard Chandrasekaran et al. NUCLEIC ACIDS RESEARCH
- Measuring DNA Hybridization Kinetics in Live Cells Using a Time-Resolved 3D Single-Molecule Tracking Method
- (2019) Yuan-I Chen et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Peptide nucleic acid (PNA) and its applications in chemical biology, diagnostics, and therapeutics
- (2019) Jacques Saarbach et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- New opportunities for designing effective small interfering RNAs
- (2019) James J. Valdés et al. Scientific Reports
- Heterochiral DNA Strand-Displacement Based on Chimeric d/l-Oligonucleotides
- (2019) Brian E. Young et al. ACS Synthetic Biology
- Locked nucleic acid: modality, diversity, and drug discovery
- (2018) Peter H. Hagedorn et al. DRUG DISCOVERY TODAY
- Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells
- (2018) Alexis Autour et al. Nature Communications
- DNA Nanostructures at the Interface with Biology
- (2018) Katherine E. Bujold et al. Chem
- Stemmed DNA nanostructure for the selective delivery of therapeutics
- (2018) H. Jin et al. Nanoscale
- Effective design principles for leakless strand displacement systems
- (2018) Boya Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolution of a General RNA-Cleaving FANA Enzyme
- (2018) Yajun Wang et al. Nature Communications
- Nucleic Acid Strand Displacement with Synthetic mRNA Inputs in Living Mammalian Cells
- (2018) Gourab Chatterjee et al. ACS Synthetic Biology
- Signal Transduction in Human Cell Lysate via Dynamic RNA Nanotechnology
- (2018) Lisa M. Hochrein et al. ACS Synthetic Biology
- Kinetics of DNA Strand Displacement Systems with Locked Nucleic Acids
- (2017) Xiaoping Olson et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Critical Analysis of Rate Constants and Turnover Frequency in Nucleic Acid-Templated Reactions: Reaching Terminal Velocity
- (2017) Dalu Chang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Heterochiral DNA Strand-Displacement Circuits
- (2017) Adam M. Kabza et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The chemical evolution of oligonucleotide therapies of clinical utility
- (2017) Anastasia Khvorova et al. NATURE BIOTECHNOLOGY
- Control of phosphorothioate stereochemistry substantially increases the efficacy of antisense oligonucleotides
- (2017) Naoki Iwamoto et al. NATURE BIOTECHNOLOGY
- Cellular uptake and trafficking of antisense oligonucleotides
- (2017) Stanley T Crooke et al. NATURE BIOTECHNOLOGY
- Engineering nucleic acid structures for programmable molecular circuitry and intracellular biocomputation
- (2017) Jiang Li et al. Nature Chemistry
- Antisense oligonucleotides: the next frontier for treatment of neurological disorders
- (2017) Carlo Rinaldi et al. Nature Reviews Neurology
- Chemistry, mechanism and clinical status of antisense oligonucleotides and duplex RNAs
- (2017) Xiulong Shen et al. NUCLEIC ACIDS RESEARCH
- Design and Characterization of DNA Strand-Displacement Circuits in Serum-Supplemented Cell Medium
- (2017) Joshua Fern et al. ACS Synthetic Biology
- Mirror-image polymerase chain reaction
- (2017) Wenjun Jiang et al. Cell Discovery
- Nucleic Acid–Based Nanodevices in Biological Imaging
- (2016) Kasturi Chakraborty et al. Annual Review of Biochemistry
- Precise and efficient siRNA design: a key point in competent gene silencing
- (2016) E Fakhr et al. CANCER GENE THERAPY
- Optimized DNA “Nanosuitcases” for Encapsulation and Conditional Release of siRNA
- (2016) Katherine E. Bujold et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Thermodynamic Features of Structural Motifs Formed by β-L-RNA
- (2016) Marta Szabat et al. PLoS One
- siRNAmod: A database of experimentally validated chemically modified siRNAs
- (2016) Showkat Ahmad Dar et al. Scientific Reports
- Turning mirror-image oligonucleotides into drugs: the evolution of Spiegelmer® therapeutics
- (2015) Axel Vater et al. DRUG DISCOVERY TODAY
- Specific Inhibition of MicroRNA Processing Using l-RNA Aptamers
- (2015) Jonathan T. Sczepanski et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Gamma Peptide Nucleic Acids: As Orthogonal Nucleic Acid Recognition Codes for Organizing Molecular Self-Assembly
- (2015) Iulia Sacui et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- A Nonenzymatic Hairpin DNA Cascade Reaction Provides High Signal Gain of mRNA Imaging inside Live Cells
- (2015) Cuichen Wu et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Computing in mammalian cells with nucleic acid strand exchange
- (2015) Benjamin Groves et al. Nature Nanotechnology
- Designing DNA nanodevices for compatibility with the immune system of higher organisms
- (2015) Sunaina Surana et al. Nature Nanotechnology
- DNA nanotechnology from the test tube to the cell
- (2015) Yuan-Jyue Chen et al. Nature Nanotechnology
- Stereospecificity of Oligonucleotide Interactions Revisited: No Evidence for Heterochiral Hybridization and Ribozyme/DNAzyme Activity
- (2015) Kai Hoehlig et al. PLoS One
- Developmental Self-Assembly of a DNA Tetrahedron
- (2014) John P. Sadowski et al. ACS Nano
- Ultraselective electrochemiluminescence biosensor based on locked nucleic acid modified toehold-mediated strand displacement reaction and junction-probe
- (2014) Xi Zhang et al. ANALYST
- Detection of Single-Nucleotide Polymorphisms Using an ON–OFF Switching of Regenerated Biosensor Based on a Locked Nucleic Acid-Integrated and Toehold-Mediated Strand Displacement Reaction
- (2014) Zhong Feng Gao et al. ANALYTICAL CHEMISTRY
- Detection of miRNA Using a Double-Strand Displacement Biosensor with a Self-Complementary Fluorescent Reporter
- (2014) Nicholas E. Larkey et al. ANALYTICAL CHEMISTRY
- Single Molecule Characterization of DNA Binding and Strand Displacement Reactions on Lithographic DNA Origami Microarrays
- (2014) Max B. Scheible et al. NANO LETTERS
- Catalysts from synthetic genetic polymers
- (2014) Alexander I. Taylor et al. NATURE
- Multi-enzyme complexes on DNA scaffolds capable of substrate channelling with an artificial swinging arm
- (2014) Jinglin Fu et al. Nature Nanotechnology
- Synthesis, biophysical properties and biological activity of second generation antisense oligonucleotides containing chiral phosphorothioate linkages
- (2014) W. Brad Wan et al. NUCLEIC ACIDS RESEARCH
- Sequence motifs associated with hepatotoxicity of locked nucleic acid—modified antisense oligonucleotides
- (2014) Andrew D. Burdick et al. NUCLEIC ACIDS RESEARCH
- Antisense Oligonucleotide Therapies
- (2014) Kendall S. Frazier TOXICOLOGIC PATHOLOGY
- Role of tRNA modifications in human diseases
- (2014) Adrian Gabriel Torres et al. TRENDS IN MOLECULAR MEDICINE
- Phosphorothioates, Essential Components of Therapeutic Oligonucleotides
- (2014) Fritz Eckstein Nucleic Acid Therapeutics
- Peptide Nucleic Acid (PNA)–DNA Duplexes: Comparison of Hybridization Affinity between Vertically and Horizontally Tethered PNA Probes
- (2013) Arpita De et al. ACS Applied Materials & Interfaces
- Binding of a Structured d-RNA Molecule by an l-RNA Aptamer
- (2013) Jonathan T. Sczepanski et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- DNA Computation in Mammalian Cells: MicroRNA Logic Operations
- (2013) James Hemphill et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Autonomous molecular cascades for evaluation of cell surfaces
- (2013) Maria Rudchenko et al. Nature Nanotechnology
- On the biophysics and kinetics of toehold-mediated DNA strand displacement
- (2013) Niranjan Srinivas et al. NUCLEIC ACIDS RESEARCH
- Imaging mRNA expression levels in living cells with PNA·DNA binary FRET probes delivered by cationic shell-crosslinked nanoparticles
- (2013) Zhenghui Wang et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- Antisense peptide nucleic acid-functionalized cationic nanocomplex for in vivo mRNA detection
- (2013) Y. Shen et al. Interface Focus
- A library of programmable DNAzymes that operate in a cellular environment
- (2013) Maya Kahan-Hanum et al. Scientific Reports
- Sequence-dependent thermodynamics of a coarse-grained DNA model
- (2012) Petr Šulc et al. JOURNAL OF CHEMICAL PHYSICS
- DNA Computation: A Photochemically Controlled AND Gate
- (2012) Alex Prokup et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Molecularly self-assembled nucleic acid nanoparticles for targeted in vivo siRNA delivery
- (2012) Hyukjin Lee et al. Nature Nanotechnology
- A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads
- (2012) S. M. Douglas et al. SCIENCE
- Synthetic Genetic Polymers Capable of Heredity and Evolution
- (2012) V. B. Pinheiro et al. SCIENCE
- siRNA Design Software for a Target Gene-Specific RNA Interference
- (2012) Yuki Naito et al. Frontiers in Genetics
- DNA Cage Delivery to Mammalian Cells
- (2011) Anthony S. Walsh et al. ACS Nano
- The design of optimal therapeutic small interfering RNA molecules targeting diverse strains of influenza A virus
- (2011) Mahmoud ElHefnawi et al. BIOINFORMATICS
- Visual DSD: a design and analysis tool for DNA strand displacement systems
- (2011) M. R. Lakin et al. BIOINFORMATICS
- Combinatorially Inducible RNA Interference Triggered by Chemically Modified Oligonucleotides
- (2011) Deepak Kumar et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Expanding the Rule Set of DNA Circuitry with Associative Toehold Activation
- (2011) Xi Chen JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Remote Toehold: A Mechanism for Flexible Control of DNA Hybridization Kinetics
- (2011) Anthony J. Genot et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Dynamic DNA nanotechnology using strand-displacement reactions
- (2011) David Yu Zhang et al. Nature Chemistry
- Synthesis and biological activity of phosphonoacetate- and thiophosphonoacetate-modified 2′-O-methyl oligoribonucleotides
- (2011) Richard N. Threlfall et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades
- (2011) L. Qian et al. SCIENCE
- Use of fully modified 2′-O-methyl antisense oligos for loss-of-function studies in vertebrate embryos
- (2010) Patricia N. Schneider et al. GENESIS
- NUPACK: Analysis and design of nucleic acid systems
- (2010) Joseph N. Zadeh et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Crystal Structure of Chiral γPNA with Complementary DNA Strand: Insights into the Stability and Specificity of Recognition and Conformational Preorganization
- (2010) Joanne I. Yeh et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- A Direct Comparison of Anti-microRNA Oligonucleotide Potency
- (2010) Kim A. Lennox et al. PHARMACEUTICAL RESEARCH
- Nano-flares for mRNA Regulation and Detection
- (2009) Andrew E. Prigodich et al. ACS Nano
- Strand Invasion of Extended, Mixed-Sequence B-DNA by γPNAs
- (2009) Gaofei He et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Control of DNA Strand Displacement Kinetics Using Toehold Exchange
- (2009) David Yu Zhang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- A large-scale chemical modification screen identifies design rules to generate siRNAs with high activity, high stability and low toxicity
- (2009) Jesper B. Bramsen et al. NUCLEIC ACIDS RESEARCH
- Hybridization kinetics is different inside cells
- (2009) I. Schoen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular Engineering of DNA: Molecular Beacons
- (2008) Kemin Wang et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Guidelines for Antisense Oligonucleotide Design and Insight Into Splice-modulating Mechanisms
- (2008) Annemieke Aartsma-Rus et al. MOLECULAR THERAPY
- Programming biomolecular self-assembly pathways
- (2008) Peng Yin et al. NATURE
- Reconfigurable, braced, three-dimensional DNA nanostructures
- (2008) Russell P. Goodman et al. Nature Nanotechnology
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