Large-scale integration of meta-QTL and genome-wide association study discovers the genomic regions and candidate genes for yield and yield-related traits in bread wheat

Cereal pre-harvest sprouting: a global agricultural disaster regulated by complex genetic and biochemical mechanisms

(2021) Li Tai et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Wheat 660K SNP array demonstrates great potential for marker‐assisted selection in polyploid wheat

(2020) Congwei Sun et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome wide screening and comparative genome analysis for Meta-QTLs, ortho-MQTLs and candidate genes controlling yield and yield-related traits in rice

(2020) Bahman Khahani et al.   BMC GENOMICS

Genetics of yield, abiotic stress tolerance and biofortification in wheat (Triticum aestivum L.)

(2020) Pushpendra Kumar Gupta et al.   THEORETICAL AND APPLIED GENETICS

Meta-QTL analysis of tan spot resistance in wheat

(2020) Yuan Liu et al.   THEORETICAL AND APPLIED GENETICS

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

A large‐scale genomic association analysis identifies the candidate causal genes conferring stripe rust resistance under multiple field environments

(2020) Jianhui Wu et al.   PLANT BIOTECHNOLOGY JOURNAL

Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development

(2020) Xiaojun Cheng et al.   PLANT JOURNAL

Multi-Locus GWAS of Quality Traits in Bread Wheat: Mining More Candidate Genes and Possible Regulatory Network

(2020) Yang Yang et al.   Frontiers in Plant Science

Meta-QTL analysis and identification of candidate genes for drought tolerance in bread wheat (Triticum aestivum L.)

(2020) Anuj Kumar et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Major genomic regions responsible for wheat yield and its components as revealed by meta-QTL and genotype–phenotype association analyses

(2020) Hui Liu et al.   PLANTA

Genome-wide association study identifies QTL for thousand grain weight in winter wheat under normal- and late-sown stressed environments

(2020) Xiaobo Wang et al.   THEORETICAL AND APPLIED GENETICS

Genetic architecture of grain yield in bread wheat based on genome-wide association studies

(2019) Faji Li et al.   BMC PLANT BIOLOGY

Integrated Meta-QTL and Genome-Wide Association Study Analyses Reveal Candidate Genes for Maize Yield

(2019) Yijun Wang et al.   JOURNAL OF PLANT GROWTH REGULATION

Genome‐wide association study of six quality traits reveals the association of the TaRPP13L1 gene with flour colour in Chinese bread wheat

(2019) Jianhui Chen et al.   PLANT BIOTECHNOLOGY JOURNAL

Discovering consensus genomic regions in wheat for root-related traits by QTL meta-analysis

(2019) Jose Miguel Soriano et al.   Scientific Reports

Meta-Analysis of the QTLome of Fusarium Head Blight Resistance in Bread Wheat: Refining the Current Puzzle

(2019) Eduardo Venske et al.   Frontiers in Plant Science

The Transcriptional Landscape of Polyploid Wheats and Their Diploid Ancestors during Embryogenesis and Grain Development

(2019) Daoquan Xiang et al.   PLANT CELL

Meta-analysis of grain iron and zinc associated QTLs identified hotspot chromosomal regions and positional candidate genes for breeding biofortified rice

(2019) Qasim Raza et al.   PLANT SCIENCE

The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency

(2019) Zhenyu Gao et al.   Nature Communications

Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

(2018) Jie Guo et al.   BMC PLANT BIOLOGY

Relationship between QTL for grain shape, grain weight, test weight, milling yield, and plant height in the spring wheat cross RL4452/‘AC Domain’

(2018) Adrian L. Cabral et al.   PLoS One

Maize Combined Insect Resistance Genomic Regions and Their Co-localization With Cell Wall Constituents Revealed by Tissue-Specific QTL Meta-Analyses

(2018) Arfang Badji et al.   Frontiers in Plant Science

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

The transcriptional landscape of polyploid wheat

(2018) R. H. Ramírez-González et al.   SCIENCE

A genome-wide association study of wheat yield and quality-related traits in southwest China

(2017) Jing Liu et al.   MOLECULAR BREEDING

Genome-wide association study for 13 agronomic traits reveals distribution of superior alleles in bread wheat from the Yellow and Huai Valley of China

(2017) Congwei Sun et al.   PLANT BIOTECHNOLOGY JOURNAL

Influence of TaGW2-6A on seed development in wheat by negatively regulating gibberellin synthesis

(2017) Qingyan Li et al.   PLANT SCIENCE

Genome-wide association study for agronomic and physiological traits in spring wheat evaluated in a range of heat prone environments

(2017) Francis C. Ogbonnaya et al.   THEORETICAL AND APPLIED GENETICS

Major genes determining yield-related traits in wheat and barley

(2017) Anna Nadolska-Orczyk et al.   THEORETICAL AND APPLIED GENETICS

Regional Association Analysis of MetaQTLs Delineates Candidate Grain Size Genes in Rice

(2017) Anurag V. Daware et al.   Frontiers in Plant Science

Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.)

(2017) Umar M. Quraishi et al.   Frontiers in Plant Science

Genome-wide association study for kernel weight-related traits using SNPs in a Chinese winter wheat population

(2016) Guangfeng Chen et al.   EUPHYTICA

Loose Plant Architecture1(LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice

(2016) Jing Miao Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide association analyses of 54 traits identified multiple loci for the determination of floret fertility in wheat

(2016) Zifeng Guo et al.   NEW PHYTOLOGIST

Hd3a,RFT1andEhd1integrate photoperiodic and drought stress signals to delay the floral transition in rice

(2016) Francesca Galbiati et al.   PLANT CELL AND ENVIRONMENT

expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform

(2016) Philippa Borrill et al.   PLANT PHYSIOLOGY

Meta-analysis of major QTL for abiotic stress tolerance in barley and implications for barley breeding

(2016) Xuechen Zhang et al.   PLANTA

The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems

(2016) Yuan Wu et al.   PLoS Genetics

Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family

(2015) Stephen Pearce et al.   BMC PLANT BIOLOGY

TaTGW6-A1, an ortholog of rice TGW6, is associated with grain weight and yield in bread wheat

(2015) Mamoona Hanif et al.   MOLECULAR BREEDING

Genomics as the key to unlocking the polyploid potential of wheat

(2015) Philippa Borrill et al.   NEW PHYTOLOGIST

Dissecting the Genetic Architecture of Leaf Rust Resistance in Wheat by QTL Meta-Analysis

(2015) Jose Miguel Soriano et al.   PHYTOPATHOLOGY

A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice

(2015) Xin Wang et al.   PLANT SCIENCE

The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling

(2015) Choon-Tak Kwon et al.   Rice

Genome-wide association for grain yield under rainfed conditions in historical wheat cultivars from Pakistan

(2015) Qurat-ul Ain et al.   Frontiers in Plant Science

Analysis of main effect QTL for thousand grain weight in European winter wheat (Triticum aestivum L.) by genome-wide association mapping

(2015) Christine D. Zanke et al.   Frontiers in Plant Science

TaGS-D1, an ortholog of rice OsGS3, is associated with grain weight and grain length in common wheat

(2014) Yingjun Zhang et al.   MOLECULAR BREEDING

A comparative meta-analysis of QTL between intraspecific Gossypium hirsutum and interspecific G. hirsutum × G. barbadense populations

(2014) Joseph I. Said et al.   MOLECULAR GENETICS AND GENOMICS

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions

(2014) V. Ramegowda et al.   PLANT PHYSIOLOGY

A consensus map for Ug99 stem rust resistance loci in wheat

(2014) Long-Xi Yu et al.   THEORETICAL AND APPLIED GENETICS

A yield-associated gene TaCWI, in wheat: its function, selection and evolution in global breeding revealed by haplotype analysis

(2014) Yanmiao Jiang et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association study for grain yield and related traits in an elite spring wheat population grown in temperate irrigated environments

(2014) Sivakumar Sukumaran et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping of yield and yield components of spring wheat under contrasting moisture regimes

(2014) Erena A. Edae et al.   THEORETICAL AND APPLIED GENETICS

Haplotype, molecular marker and phenotype effects associated with mineral nutrient and grain size traits of TaGS1a in wheat

(2013) Ying Guo et al.   FIELD CROPS RESEARCH

Draft genome of the wheat A-genome progenitor Triticum urartu

(2013) Hong-Qing Ling et al.   NATURE

GA-Responsive Dwarfing Gene Rht12 Affects the Developmental and Agronomic Traits in Common Bread Wheat

(2013) Liang Chen et al.   PLoS One

Yield Trends Are Insufficient to Double Global Crop Production by 2050

(2013) Deepak K. Ray et al.   PLoS One

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars

(2013) C. R. Cavanagh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms

(2012) O. Sosnowski et al.   BIOINFORMATICS

Evaluation of 14 morphological, yield-related and physiological traits as indicators of drought tolerance in Chinese winter bread wheat revealed by analysis of the membership function value of drought tolerance (MFVD)

(2012) Xiaojie Chen et al.   FIELD CROPS RESEARCH

Meta-analysis combined with syntenic metaQTL mining dissects candidate loci for maize yield

(2012) Yijun Wang et al.   MOLECULAR BREEDING

Tillering promotion by paclobutrazol in wheat and its relationship with plant carbohydrate status

(2012) SG Assuero et al.   NEW ZEALAND JOURNAL OF AGRICULTURAL RESEARCH

A Common Genetic Determinism for Sensitivities to Soil Water Deficit and Evaporative Demand: Meta-Analysis of Quantitative Trait Loci and Introgression Lines of Maize

(2011) C. Welcker et al.   PLANT PHYSIOLOGY

Genomic Distribution of Quantitative Trait Loci for Yield and Yield-related Traits in Common Wheat

(2010) Li-Yi Zhang et al.   Journal of Integrative Plant Biology

Isolation and characterization of two putative cytokinin oxidase genes related to grain number per spike phenotype in wheat

(2010) Jinpeng Zhang et al.   MOLECULAR BIOLOGY REPORTS

Improved resolution in the position of drought-related QTLs in a single mapping population of rice by meta-analysis

(2009) Farkhanda S Khowaja et al.   BMC GENOMICS

OsMADS50andOsMADS56function antagonistically in regulating long day (LD)-dependent flowering in rice

(2009) CHOONG-HWAN RYU et al.   PLANT CELL AND ENVIRONMENT

A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice

(2008) S.-F. Lo et al.   PLANT CELL

Gene expression, cellular localisation and function of glutamine synthetase isozymes in wheat (Triticum aestivum L.)

(2008) Stéphanie M. Bernard et al.   PLANT MOLECULAR BIOLOGY