Genome wide screening and comparative genome analysis for Meta-QTLs, ortho-MQTLs and candidate genes controlling yield and yield-related traits in rice
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genome wide screening and comparative genome analysis for Meta-QTLs, ortho-MQTLs and candidate genes controlling yield and yield-related traits in rice
Authors
Keywords
-
Journal
BMC GENOMICS
Volume 21, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-04-10
DOI
10.1186/s12864-020-6702-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genome-wide meta-analysis on yield and yield-related QTLs in barley (Hordeum vulgare L.)
- (2019) Bahman Khahani et al. MOLECULAR BREEDING
- Evaluation of agro-morphological traits related to grain yield of Iranian wheat genotypes in drought-stress and normal irrigation conditions
- (2018) Sayedeh Saba Bilgrami et al. Australian Journal of Crop Science
- Identification of QTLs and Meta-QTLs for Seven Agronomic Traits in Multiple Maize Populations under Well-Watered and Water-Stressed Conditions
- (2018) Xiaoqiang Zhao et al. CROP SCIENCE
- Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length
- (2018) Dharminder Bhatia et al. EUPHYTICA
- Further QTL mapping for yield component traits using introgression lines in rice (Oryza sativa L.) under drought field environments
- (2018) Yuhui Xu et al. EUPHYTICA
- Identification of drought responsive QTLs during vegetative growth stage of rice using a saturated GBS-based SNP linkage map
- (2018) Uttam Bhattarai et al. EUPHYTICA
- Genetic dissection of rice (Oryza sativa L.) tiller, plant height, and grain yield based on QTL mapping and metaanalysis
- (2018) L. Lei et al. EUPHYTICA
- SWEET11 and 15 as key players in seed filling in rice
- (2018) Jungil Yang et al. NEW PHYTOLOGIST
- Meta-analysis and overview analysis of quantitative trait locis associated with fatty acid content in soybean for candidate gene mining
- (2018) Hongtao Qin et al. PLANT BREEDING
- OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport
- (2018) Yueqin Heng et al. PLANT CELL
- Genetic interaction involving photoperiod-responsive Hd1 promotes early flowering under long-day conditions in rice
- (2018) Prasanta K. Subudhi et al. Scientific Reports
- A heading date QTL, qHD7.2, from wild rice (Oryza rufipogon) delays flowering and shortens panicle length under long-day conditions
- (2018) Li Jing et al. Scientific Reports
- Genetic Mapping of Quantitative Trait Loci for Grain Yield under Drought in Rice under Controlled Greenhouse Conditions
- (2018) Julio Solis et al. Frontiers in Chemistry
- White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice
- (2017) Yusong Lv et al. JOURNAL OF EXPERIMENTAL BOTANY
- SOFIA: An R Package for Enhancing Genetic Visualization With Circos
- (2017) Luis Diaz-Garcia et al. JOURNAL OF HEREDITY
- GRAIN INCOMPLETE FILLING 2regulates grain filling and starch synthesis during rice caryopsis development
- (2017) Xiangjin Wei et al. Journal of Integrative Plant Biology
- Genetic dissection of large grain shape in rice cultivar ‘Nanyangzhan’ and validation of a grain thickness QTL (qGT3.1) and a grain length QTL (qGL3.4)
- (2017) Da Zhao et al. MOLECULAR BREEDING
- A chromosome conformation capture ordered sequence of the barley genome
- (2017) Martin Mascher et al. NATURE
- SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development
- (2017) Kunpeng Liu et al. NEW PHYTOLOGIST
- Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice
- (2017) Vittoria Brambilla et al. PLANT CELL
- Identification and validation of a novel major QTL for harvest index in rice (Oryza sativa L.)
- (2017) Shaohong Zhang et al. Rice
- 08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice
- (2017) Hua Yuan et al. Rice
- GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety
- (2017) Yong Zhou et al. Rice
- Identification of Major Effect QTLs for Agronomic Traits and CSSLs in Rice from Swarna/Oryza nivara Derived Backcross Inbred Lines
- (2017) Malathi Surapaneni et al. Frontiers in Plant Science
- Regional Association Analysis of MetaQTLs Delineates Candidate Grain Size Genes in Rice
- (2017) Anurag V. Daware et al. Frontiers in Plant Science
- Candidate Loci for Yield-Related Traits in Maize Revealed by a Combination of MetaQTL Analysis and Regional Association Mapping
- (2017) Lin Chen et al. Frontiers in Plant Science
- Genome-wide association mapping in winter barley for grain yield and culm cell wall polymer content using the high-throughput CoMPP technique
- (2017) Andrea Bellucci et al. PLoS One
- QTL mapping using an ultra-high-density SNP map reveals a major locus for grain yield in an elite rice restorer R998
- (2017) Manshan Zhu et al. Scientific Reports
- Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice
- (2016) Chun-Kai Huang et al. BMC PLANT BIOLOGY
- Genetic dissection of heading date and yield under Mediterranean dry climate in barley (Hordeum vulgare L.)
- (2016) Elahe Tavakol et al. EUPHYTICA
- The riceYABBY4gene regulates plant growth and development through modulating the gibberellin pathway
- (2016) Chao Yang et al. JOURNAL OF EXPERIMENTAL BOTANY
- NARROW AND ROLLED LEAF 2regulates leaf shape, male fertility, and seed size in rice
- (2016) Shuangshuang Zhao et al. Journal of Integrative Plant Biology
- Meta-analysis to refine map position and reduce confidence intervals for delayed-canopy-wilting QTLs in soybean
- (2016) Sadal Hwang et al. MOLECULAR BREEDING
- Quantitative trait loci identification and meta-analysis for rice panicle-related traits
- (2016) Yahui Wu et al. MOLECULAR GENETICS AND GENOMICS
- OsSPL13 controls grain size in cultivated rice
- (2016) Lizhen Si et al. NATURE GENETICS
- Rice SNP-seek database update: new SNPs, indels, and queries
- (2016) Locedie Mansueto et al. NUCLEIC ACIDS RESEARCH
- Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice
- (2016) Yaping Gao et al. PLANT PHYSIOLOGY
- Yield QTLome distribution correlates with gene density in maize
- (2016) Ana Karine Martinez et al. PLANT SCIENCE
- Meta-analysis of major QTL for abiotic stress tolerance in barley and implications for barley breeding
- (2016) Xuechen Zhang et al. PLANTA
- Genetic control of flowering time in rice: integration of Mendelian genetics and genomics
- (2016) Kiyosumi Hori et al. THEORETICAL AND APPLIED GENETICS
- Quantitative trait locus mapping for salt tolerance at maturity stage in indica rice using replicated F2 population
- (2016) Md. Shah Kamal Khan et al. Brazilian Journal of Botany
- QTL mapping of grain appearance quality traits and grain weight using a recombinant inbred population in rice (Oryza sativa L.)
- (2016) Fang-yuan GAO et al. Journal of Integrative Agriculture
- The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering
- (2016) Xuehui Sun et al. PLoS Genetics
- SNP-Based QTL Mapping of 15 Complex Traits in Barley under Rain-Fed and Well-Watered Conditions by a Mixed Modeling Approach
- (2016) Freddy Mora et al. Frontiers in Plant Science
- Improvement of Rice Biomass Yield through QTL-Based Selection
- (2016) Kazuki Matsubara et al. PLoS One
- Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing
- (2016) Xin Ma et al. Scientific Reports
- Meta-Analysis of Wheat QTL Regions Associated with Adaptation to Drought and Heat Stress
- (2015) M. Andrea Acuña-Galindo et al. CROP SCIENCE
- Genetic mapping of a QTL controlling source–sink size and heading date in rice
- (2015) Xiaodeng Zhan et al. GENE
- Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice
- (2015) Xiaohua Zou et al. JOURNAL OF EXPERIMENTAL BOTANY
- Isolation of a Novel Lodging Resistance QTL Gene Involved in Strigolactone Signaling and Its Pyramiding with a QTL Gene Involved in Another Mechanism
- (2015) Kenji Yano et al. Molecular Plant
- A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice
- (2015) Jiang Hu et al. Molecular Plant
- Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.)
- (2015) X. Liu et al. PLANT CELL REPORTS
- OsPIN5bmodulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution
- (2015) Guangwen Lu et al. PLANT JOURNAL
- PAY1improves plant architecture and enhances grain yield in rice
- (2015) Lei Zhao et al. PLANT JOURNAL
- The BarleyUniculme4Gene Encodes a BLADE-ON-PETIOLE-Like Protein That Controls Tillering and Leaf Patterning
- (2015) Elahe Tavakol et al. PLANT PHYSIOLOGY
- OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth
- (2015) Harin Jung et al. PLANT SCIENCE
- A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.)
- (2015) Yijun Wang et al. PLANTA
- Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene
- (2015) Keita Tsukahara et al. PLoS One
- Rapid Identification of Major QTLs Associated with Rice Grain Weight and Their Utilization
- (2015) Feifei Xu et al. PLoS One
- A Chromosome Segment Substitution Library of Weedy Rice for Genetic Dissection of Complex Agronomic and Domestication Traits
- (2015) Prasanta K. Subudhi et al. PLoS One
- Association Mapping of Agronomic QTLs in U.S. Spring Barley Breeding Germplasm
- (2015) Duke Pauli et al. Plant Genome
- Multiple major QTL lead to stable yield performance of rice cultivars across varying drought intensities
- (2014) Shalabh Dixit et al. BMC GENETICS
- Tagging quantitative trait loci for heading date and plant height in important breeding parents of rice (Oryza sativa)
- (2014) Seonghee Lee et al. EUPHYTICA
- Insights into the Maize Pan-Genome and Pan-Transcriptome
- (2014) C. N. Hirsch et al. PLANT CELL
- The BBX family of plant transcription factors
- (2014) Sreeramaiah N. Gangappa et al. TRENDS IN PLANT SCIENCE
- Genetics of Tillering in Rice and Barley
- (2014) Ahmed Hussien et al. Plant Genome
- Meta-analyses of QTL for grain yield and anthesis silking interval in 18 maize populations evaluated under water-stressed and well-watered environments
- (2013) Kassa Semagn et al. BMC GENOMICS
- Identification of qRL7, a major quantitative trait locus associated with rice root length in hydroponic conditions
- (2013) Huimin Wang et al. BREEDING SCIENCE
- Detection of main-effect and epistatic QTL for yield-related traits in rice under drought stress and normal conditions
- (2013) Wang Xing et al. CANADIAN JOURNAL OF PLANT SCIENCE
- Background-Independent Quantitative Trait Loci for Drought Tolerance Identified Using Advanced Backcross Introgression Lines in Rice
- (2013) Yun Wang et al. CROP SCIENCE
- Molecular Control of Flowering in Response to Day Length in Rice
- (2013) Vittoria Brambilla et al. Journal of Integrative Plant Biology
- SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice
- (2013) Romy Schmidt et al. Molecular Plant
- Structural and Temporal Variation in Genetic Diversity of European Spring Two-Row Barley Cultivars and Association Mapping of Quantitative Traits
- (2013) Alessandro Tondelli et al. Plant Genome
- BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms
- (2012) O. Sosnowski et al. BIOINFORMATICS
- QTL analysis of novel genomic regions associated with yield and yield related traits in new plant type based recombinant inbred lines of rice (Oryza sativa L.)
- (2012) Balram Marathi et al. BMC PLANT BIOLOGY
- Genome-wide association studies for agronomical traits in a world wide spring barley collection
- (2012) Raj K Pasam et al. BMC PLANT BIOLOGY
- Identification of Genetic Overlaps for Salt and Drought Tolerance Using Simple Sequence Repeat Markers on an Advanced Backcross Population in Rice
- (2012) Wang Yun et al. CROP SCIENCE
- Yield-related QTLs and Their Applications in Rice Genetic ImprovementF
- (2012) Xufeng Bai et al. Journal of Integrative Plant Biology
- Identification of quantitative trait loci for grain size and the contributions of major grain-size QTLs to grain weight in rice
- (2012) Liang Sun et al. MOLECULAR BREEDING
- Genome-wide association mapping of agronomic traits in relevant barley germplasm in Uruguay
- (2012) Andrés Locatelli et al. MOLECULAR BREEDING
- Meta-analysis combined with syntenic metaQTL mining dissects candidate loci for maize yield
- (2012) Yijun Wang et al. MOLECULAR BREEDING
- A map of rice genome variation reveals the origin of cultivated rice
- (2012) Xuehui Huang et al. NATURE
- Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size
- (2012) Jong-Kuk Na et al. Plant Biotechnology Reports
- Dwarf and deformed flower 1,encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativaL.)
- (2012) Yuanlin Duan et al. PLANT JOURNAL
- Genetic bases of rice grain shape: so many genes, so little known
- (2012) Rongyu Huang et al. TRENDS IN PLANT SCIENCE
- Meta-analysis of grain yield QTL identified during agricultural drought in grasses showed consensus
- (2011) BP Mallikarjuna Swamy et al. BMC GENOMICS
- Quantitative trait loci for the number of grains per panicle dependent on or independent of heading date in rice (Oryza sativa L.)
- (2011) Touming Liu et al. BREEDING SCIENCE
- Mapping of QTLs associated with important agronomic traits using three populations derived from a super hybrid rice Xieyou9308
- (2011) Yongshu Liang et al. EUPHYTICA
- Genetic analysis and validation of quantitative trait loci associated with reproductive-growth traits and grain yield under drought stress in a doubled haploid line population of rice (Oryza sativa L.)
- (2011) Reena Sellamuthu et al. FIELD CROPS RESEARCH
- Quantitative trait loci for rice yield-related traits using recombinant inbred lines derived from two diverse cultivars
- (2011) XU FENG BAI et al. JOURNAL OF GENETICS
- Unlocking the Barley Genome by Chromosomal and Comparative Genomics
- (2011) Klaus F.X. Mayer et al. PLANT CELL
- Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins
- (2011) Jeong Hwan Lee et al. PLANT SCIENCE
- Gains in QTL Detection Using an Ultra-High Density SNP Map Based on Population Sequencing Relative to Traditional RFLP/SSR Markers
- (2011) Huihui Yu et al. PLoS One
- Genetic and Molecular Bases of Rice Yield
- (2010) Yongzhong Xing et al. Annual Review of Plant Biology
- Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variation
- (2010) Hiroyuki Tsuji et al. CURRENT OPINION IN PLANT BIOLOGY
- QTL analysis for flowering time using backcross population between Oryza sativa Nipponbare and O. rufipogon
- (2010) Pham Thien Thanh et al. GENES & GENETIC SYSTEMS
- Genomic Distribution of Quantitative Trait Loci for Yield and Yield-related Traits in Common Wheat
- (2010) Li-Yi Zhang et al. Journal of Integrative Plant Biology
- Clustered QTL for source leaf size and yield traits in rice (Oryza sativa L.)
- (2010) Peng Wang et al. MOLECULAR BREEDING
- Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution
- (2010) Umar Masood Quraishi et al. PLANT JOURNAL
- Meta-analysis of Yield QTLs Derived from Inter-specific Crosses of Rice Reveals Consensus Regions and Candidate Genes
- (2010) B. P. Mallikarjuna Swamy et al. PLANT MOLECULAR BIOLOGY REPORTER
- Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines
- (2010) Lu Wang et al. THEORETICAL AND APPLIED GENETICS
- Molecular mapping and location of QTLs for drought-resistance traits in indica rice (Oryza sativa L.) lines adapted to target environments
- (2009) Selvaraj Michael Gomez et al. ACTA PHYSIOLOGIAE PLANTARUM
- Mapping QTLs for heading synchrony in a doubled haploid population of rice in two environments
- (2009) Liangyong Ma et al. Journal of Genetics and Genomics
- The Ethylene Receptor ETR2 Delays Floral Transition and Affects Starch Accumulation in Rice
- (2009) H. Wuriyanghan et al. PLANT CELL
- QTL mapping of agronomic traits using an RIL population derived from a cross between temperate japonica cultivars in rice (Oryza sativa L.)
- (2008) Soo-Jin Kwon et al. BREEDING SCIENCE
- Identifying and exploiting grain yield genes in rice
- (2008) Tomoaki Sakamoto et al. CURRENT OPINION IN PLANT BIOLOGY
- Trait identification and QTL validation for reproductive stage drought resistance in rice using selective genotyping of near flowering RILs
- (2008) M. Subashri et al. EUPHYTICA
- QTLs linked to leaf epicuticular wax, physio-morphological and plant production traits under drought stress in rice (Oryza sativa L.)
- (2008) S. Srinivasan et al. PLANT GROWTH REGULATION
- Detection of quantitative trait loci controlling extremely early heading in rice
- (2008) Y. Nonoue et al. THEORETICAL AND APPLIED GENETICS
- Novel QTLs for photoperiodic flowering revealed by using reciprocal backcross inbred lines from crosses between japonica rice cultivars
- (2008) K. Matsubara et al. THEORETICAL AND APPLIED GENETICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search