Fusarium graminearum DICER-like-dependent sRNAs are required for the suppression of host immune genes and full virulence

Analysis of tRNA-derived RNA fragments (tRFs) in Cryptococcus spp.: RNAi-independent generation and possible compensatory effects in a RNAi-deficient genotype

(2021) Rodrigo Silva Araujo Streit et al.   Fungal Biology

Comparative Analysis of Transcriptome and sRNAs Expression Patterns in the Brachypodium distachyon—Magnaporthe oryzae Pathosystems

(2021) Silvia Zanini et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Host‐induced gene silencing – mechanisms and applications

(2021) Aline Koch et al.   NEW PHYTOLOGIST

Requirements for fungal uptake of dsRNA and gene silencing in RNAi-based crop protection strategies

(2021) Ena Šečić et al.   CURRENT OPINION IN BIOTECHNOLOGY

Oomycete small RNAs bind to the plant RNA-induced silencing complex for virulence

(2020) Florian Dunker et al.   eLife

RNA-Spray-Mediated Silencing of Fusarium graminearum AGO and DCL Genes Improve Barley Disease Resistance

(2020) Bernhard Timo Werner et al.   Frontiers in Plant Science

tRFtarget: a database for transfer RNA-derived fragment targets

(2020) Ningshan Li et al.   NUCLEIC ACIDS RESEARCH

tsRBase: a comprehensive database for expression and function of tsRNAs in multiple species

(2020) Yuanli Zuo et al.   NUCLEIC ACIDS RESEARCH

The Evolutionary Significance of RNAi in the Fungal Kingdom

(2020) Carlos Lax et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Discovery and profiling of small RNAs from Puccinia triticina by deep sequencing and identification of their potential targets in wheat

(2019) Himanshu Dubey et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Signaling Crosstalk between Salicylic Acid and Ethylene/Jasmonate in Plant Defense: Do We Understand What They Are Whispering?

(2019) Ning Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Perception of double‐stranded RNA in plant antiviral immunity

(2019) Annette Niehl et al.   MOLECULAR PLANT PATHOLOGY

Rhizobial tRNA-derived small RNAs are signal molecules regulating plant nodulation

(2019) Bo Ren et al.   SCIENCE

Different Components of the RNA Interference Machinery Are Required for Conidiation, Ascosporogenesis, Virulence, Deoxynivalenol Production, and Fungal Inhibition by Exogenous Double-Stranded RNA in the Head Blight Pathogen Fusarium graminearum

(2019) Fatima Yousif Gaffar et al.   Frontiers in Microbiology

Roles of Argonautes and Dicers on Sclerotinia sclerotiorum Antiviral RNA Silencing

(2019) Achal Neupane et al.   Frontiers in Plant Science

RNA-based technologies for insect control in plant production

(2019) Shaoshuai Liu et al.   BIOTECHNOLOGY ADVANCES

Advanced strategies to control plant pathogenic fungi by host-induced gene silencing (HIGS) and spray-induced gene silencing (SIGS)

(2019) Hyunkyu Sang et al.   Plant Biotechnology Reports

One Small RNA of Fusarium graminearum Targets and Silences CEBiP Gene in Common Wheat

(2019) Jiao Jian et al.   Microorganisms

RNA Interference Mechanisms and Applications in Plant Pathology

(2018) Cristina Rosa et al.   Annual Review of Phytopathology

Cross-kingdom RNA trafficking and environmental RNAi — nature's blueprint for modern crop protection strategies

(2018) Qiang Cai et al.   CURRENT OPINION IN MICROBIOLOGY

Synthetic biology approach for plant protection using dsRNA

(2018) Annette Niehl et al.   PLANT BIOTECHNOLOGY JOURNAL

Plants send small RNAs in extracellular vesicles to fungal pathogen to silence virulence genes

(2018) Qiang Cai et al.   SCIENCE

Identification and application of exogenous dsRNA confers plant protection against Sclerotinia sclerotiorum and Botrytis cinerea

(2018) Austein G. McLoughlin et al.   Scientific Reports

Exogenously applied dsRNA molecules deriving from the Zucchini yellow mosaic virus (ZYMV) genome move systemically and protect cucurbits against ZYMV

(2017) Athanasios Kaldis et al.   MOLECULAR PLANT PATHOLOGY

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Puccinia striiformis f. sp. tritici microRNA-like RNA 1 (Pst -milR1), an important pathogenicity factor of Pst , impairs wheat resistance to Pst by suppressing the wheat pathogenesis-related 2 gene

(2017) Bing Wang et al.   NEW PHYTOLOGIST

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

tRNA-derived small RNAs target transposable element transcripts

(2017) German Martinez et al.   NUCLEIC ACIDS RESEARCH

Evaluation of SmartStax and SmartStax PRO maize against western corn rootworm and northern corn rootworm: efficacy and resistance management

(2017) Graham P Head et al.   PEST MANAGEMENT SCIENCE

Botrytis small RNA Bc-siR37 suppresses plant defense genes by cross-kingdom RNAi

(2017) Ming Wang et al.   RNA Biology

Genome-wide exonic small interference RNA-mediated gene silencing regulates sexual reproduction in the homothallic fungus Fusarium graminearum

(2017) Hokyoung Son et al.   PLoS Genetics

RNA Silencing in Plants: Mechanisms, Technologies and Applications in Horticultural Crops

(2016) Qigao Guo et al.   CURRENT GENOMICS

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential expression of microRNAs and potential targets under drought stress in barley

(2016) Jannatul Ferdous et al.   PLANT CELL AND ENVIRONMENT

Exogenous application of double-stranded RNA molecules from TMV p126 and CP genes confers resistance against TMV in tobacco

(2016) Naga Charan Konakalla et al.   PLANTA

Biogenesis and Function of Transfer RNA-Related Fragments (tRFs)

(2016) Pankaj Kumar et al.   TRENDS IN BIOCHEMICAL SCIENCES

An RNAi-Based Control of Fusarium graminearum Infections Through Spraying of Long dsRNAs Involves a Plant Passage and Is Controlled by the Fungal Silencing Machinery

(2016) Aline Koch et al.   PLoS Pathogens

Transfer RNA Derived Small RNAs Targeting Defense Responsive Genes Are Induced during Phytophthora capsici Infection in Black Pepper (Piper nigrum L.)

(2016) Srinivasan Asha et al.   Frontiers in Plant Science

The tRNA-Derived Small RNAs Regulate Gene Expression through Triggering Sequence-Specific Degradation of Target Transcripts in the Oomycete Pathogen Phytophthora sojae

(2016) Qinhu Wang et al.   Frontiers in Plant Science

Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici)

(2015) Nicholas A. Mueth et al.   BMC GENOMICS

A Large-Scale Functional Analysis of Putative Target Genes of Mating-Type Loci Provides Insight into the Regulation of Sexual Development of the Cereal Pathogen Fusarium graminearum

(2015) Hee-Kyoung Kim et al.   PLoS Genetics

Global Identification of MicroRNAs and Their Targets in Barley under Salinity Stress

(2015) Pingchuan Deng et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction

(2014) Prashant K Srivastava et al.   BMC GENOMICS

Fragmentation of tRNA in Phytophthora infestans asexual life cycle stages and during host plant infection

(2014) Anna KM Åsman et al.   BMC MICROBIOLOGY

Differential expression of microRNAs and other small RNAs in barley between water and drought conditions

(2014) Michael Hackenberg et al.   PLANT BIOTECHNOLOGY JOURNAL

New wind in the sails: improving the agronomic value of crop plants through RNAi-mediated gene silencing

(2014) Aline Koch et al.   PLANT BIOTECHNOLOGY JOURNAL

Gene Expression Changes Induced byTrypanosoma cruziShed Microvesicles in Mammalian Host Cells: Relevance of tRNA-Derived Halves

(2014) Maria R. Garcia-Silva et al.   Biomed Research International

Host-induced gene silencing of cytochrome P450 lanosterol C14 -demethylase-encoding genes confers strong resistance to Fusarium species

(2013) A. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

miRNA regulation in the early development of barley seed

(2012) Julien Curaba et al.   BMC PLANT BIOLOGY

Hairpin Priming Is Better Suited than In Vitro Polyadenylation to Generate cDNA for Plant miRNA qPCR

(2012) Sajag Adhikari et al.   Molecular Plant

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Evaluation of the Use of the Polyubiquitin Genes, Ubi4 and Ubi10 as Reference Genes for Expression Studies in Brachypodium distachyon

(2012) John P. Chambers et al.   PLoS One

Conservation and divergence in plant microRNAs

(2011) Matthew W. Jones-Rhoades   PLANT MOLECULAR BIOLOGY

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

(2010) Eric Bonnet et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Developing Kernel and Rachis Node Induce the Trichothecene Pathway ofFusarium graminearumDuring Wheat Head Infection

(2009) Peter Ilgen et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Fusarium graminearumexploits ethylene signalling to colonize dicotyledonous and monocotyledonous plants

(2009) X. Chen et al.   NEW PHYTOLOGIST

Bacterial Effectors Target the Common Signaling Partner BAK1 to Disrupt Multiple MAMP Receptor-Signaling Complexes and Impede Plant Immunity

(2008) Libo Shan et al.   Cell Host & Microbe

The BTB ubiquitin ligases ETO1, EOL1 and EOL2 act collectively to regulate ethylene biosynthesis in Arabidopsis by controlling type-2 ACC synthase levels

(2008) Matthew J. Christians et al.   PLANT JOURNAL