Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici)

Small RNAs: A New Paradigm in Plant-Microbe Interactions

(2014) Arne Weiberg et al.   Annual Review of Phytopathology

A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction

(2014) Prashant K Srivastava et al.   BMC GENOMICS

A Time for More Booms and Fewer Busts? Unraveling Cereal–Rust Interactions

(2014) Scot Hulbert et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Expression Profiling during Arabidopsis/Downy Mildew Interaction Reveals a Highly-Expressed Effector That Attenuates Responses to Salicylic Acid

(2014) Shuta Asai et al.   PLoS Pathogens

Communication Between Filamentous Pathogens and Plants at the Biotrophic Interface

(2013) Mihwa Yi et al.   Annual Review of Phytopathology

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors

(2013) Dario Cantu et al.   BMC GENOMICS

A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem

(2013) Steffen Knauer et al.   DEVELOPMENTAL CELL

Wheat stripe (yellow) rust caused byPuccinia striiformisf. sp.tritici

(2013) Wanquan Chen et al.   MOLECULAR PLANT PATHOLOGY

Characterization of a Tryptophan 2-Monooxygenase Gene fromPuccinia graminisf. sp.triticiInvolved in Auxin Biosynthesis and Rust Pathogenicity

(2013) Chuntao Yin et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Multiple Rice MicroRNAs Are Involved in Immunity against the Blast Fungus Magnaporthe oryzae

(2013) Y. Li et al.   PLANT PHYSIOLOGY

Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

(2013) Noah Fahlgren et al.   PLoS One

ShortStack: Comprehensive annotation and quantification of small RNA genes

(2013) M. J. Axtell   RNA

Small RNA—the Secret of Noble Rot

(2013) David Baulcombe   SCIENCE

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

Identification of MicroRNA-Like RNAs in Mycelial and Yeast Phases of the Thermal Dimorphic Fungus Penicillium marneffei

(2013) Susanna K. P. Lau et al.   PLoS Neglected Tropical Diseases

Natural antisense transcripts in fungi

(2012) Michael E. Donaldson et al.   MOLECULAR MICROBIOLOGY

3-D imaging of temporal and spatial development of Puccinia striiformis haustoria in wheat

(2012) Chris K. Sørensen et al.   MYCOLOGIA

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Endogenous silencing ofPuccinia triticinapathogenicity genes throughin planta-expressed sequences leads to the suppression of rust diseases on wheat

(2012) Vinay Panwar et al.   PLANT JOURNAL

Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

(2012) Diane G. O. Saunders et al.   PLoS One

Identification and Functional Demonstration of miRNAs in the Fungus Cryptococcus neoformans

(2012) Nan Jiang et al.   PLoS One

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

(2011) Cristiano C Nunes et al.   BMC GENOMICS

Global status of stripe rust: a review of historical and current threats

(2011) Colin R. Wellings   EUPHYTICA

Host-induced gene silencing: a tool for understanding fungal host interaction and for developing novel disease control strategies

(2011) CRISTIANO C. NUNES et al.   MOLECULAR PLANT PATHOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

(2011) Dario Cantu et al.   PLoS One

Compatibility with Killer Explains the Rise of RNAi-Deficient Fungi

(2011) I. A. Drinnenberg et al.   SCIENCE

Vive la différence: biogenesis and evolution of microRNAs in plants and animals

(2011) Michael J Axtell et al.   GENOME BIOLOGY

Characterization and application of small RNAs and RNA silencing mechanisms in fungi

(2011) Cristiano C. Nunes et al.   Fungal Biology Reviews

Role of Small RNAs in Host-Microbe Interactions

(2010) Surekha Katiyar-Agarwal et al.   Annual Review of Phytopathology

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

(2010) Eric Bonnet et al.   BIOINFORMATICS

Powdery mildew fungal effector candidates share N-terminal Y/F/WxC-motif

(2010) Dale Godfrey et al.   BMC GENOMICS

Diverse Pathways Generate MicroRNA-like RNAs and Dicer-Independent Small Interfering RNAs in Fungi

(2010) Heng-Chi Lee et al.   MOLECULAR CELL

Development of a Host-Induced RNAi System in the Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici

(2010) Chuntao Yin et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

HIGS: Host-Induced Gene Silencing in the Obligate Biotrophic Fungal PathogenBlumeria graminis

(2010) Daniela Nowara et al.   PLANT CELL

Escalating Threat of Wheat Rusts

(2010) M. S. Hovmoller et al.   SCIENCE

Multiple distinct small RNAs originate from the same microRNA precursors

(2010) Weixiong Zhang et al.   GENOME BIOLOGY

Fungal Effector Proteins

(2009) Ioannis Stergiopoulos et al.   Annual Review of Phytopathology

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Generation and analysis of expression sequence tags from haustoria of the wheat stripe rust fungus Puccinia striiformis f. sp. Tritici

(2009) Chuntao Yin et al.   BMC GENOMICS

Small RNAs and developmental timing in plants

(2009) R Scott Poethig   CURRENT OPINION IN GENETICS & DEVELOPMENT

qiRNA is a new type of small interfering RNA induced by DNA damage

(2009) Heng-Chi Lee et al.   NATURE

RNAi in Budding Yeast

(2009) I. A. Drinnenberg et al.   SCIENCE

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

(2008) Tim Hulsen et al.   BMC GENOMICS

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL