tRFtarget: a database for transfer RNA-derived fragment targets

Interplay of tRNA-Derived Fragments and T Cell Activation in Breast Cancer Patient Survival

(2020) Nayang Shan et al.   Cancers

tRNA Fragments Show Intertwining with mRNAs of Specific Repeat Content and Have Links to Disparities

(2019) Aristeidis G Telonis et al.   CANCER RESEARCH

Inferring targeting modes of Argonaute-loaded tRNA fragments

(2019) Lingyu Guan et al.   RNA Biology

Roles of tRNA-derived fragments in human cancers

(2018) Chunxiao Sun et al.   CANCER LETTERS

tRNA-derived small non-coding RNAs in human disease

(2018) Lei Zhu et al.   CANCER LETTERS

tRNA fragments (tRFs) guide Ago to regulate gene expression post-transcriptionally in a Dicer-independent manner

(2018) Canan Kuscu et al.   RNA

PtRFdb: a database for plant transfer RNA-derived fragments

(2018) Nikita Gupta et al.   Database-The Journal of Biological Databases and Curation

Integration of accessibility data from structure probing into RNA-RNA interaction prediction

(2018) Milad Miladi et al.   BIOINFORMATICS

Mouse Genome Database (MGD) 2019

(2018) Carol J Bult et al.   NUCLEIC ACIDS RESEARCH

GENCODE reference annotation for the human and mouse genomes

(2018) Adam Frankish et al.   NUCLEIC ACIDS RESEARCH

Genenames.org: the HGNC and VGNC resources in 2019

(2018) Bryony Braschi et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

(2017) Martin Mann et al.   NUCLEIC ACIDS RESEARCH

MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects

(2017) Venetia Pliatsika et al.   NUCLEIC ACIDS RESEARCH

tsRNA signatures in cancer

(2017) Veronica Balatti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers

(2016) Ling-Ling Zheng et al.   NUCLEIC ACIDS RESEARCH

Biogenesis and Function of Transfer RNA-Related Fragments (tRFs)

(2016) Pankaj Kumar et al.   TRENDS IN BIOCHEMICAL SCIENCES

A comprehensive comparison of general RNA–RNA interaction prediction methods

(2015) Daniel Lai et al.   NUCLEIC ACIDS RESEARCH

Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets

(2014) Pankaj Kumar et al.   BMC BIOLOGY

XSEDE: Accelerating Scientific Discovery

(2014) John Towns et al.   COMPUTING IN SCIENCE & ENGINEERING

tRFdb: a database for transfer RNA fragments

(2014) Pankaj Kumar et al.   NUCLEIC ACIDS RESEARCH

Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding

(2013) Aleksandra Helwak et al.   CELL

Small RNAs derived from the 5′ end of tRNA can inhibit protein translation in human cells

(2013) Andrew Sobala et al.   RNA Biology

Accessibility and conservation: General features of bacterial small RNA–mRNA interactions?

(2012) Andreas Richter et al.   RNA Biology

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)

(2009) Yong Sun Lee et al.   GENES & DEVELOPMENT

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH