Sex-biased gene expression and recent sex chromosome turnover

Comparative and population genomics approaches reveal the basis of adaptation to deserts in a small rodent

(2020) Anna Tigano et al.   MOLECULAR ECOLOGY

Absence of a Faster-X Effect in Beetles (Tribolium, Coleoptera)

(2020) Carrie A. Whittle et al.   G3-Genes Genomes Genetics

Drivers and dynamics of a massive adaptive radiation in cichlid fishes

(2020) Fabrizia Ronco et al.   NATURE

The genomic timeline of cichlid fish diversification across continents

(2020) Michael Matschiner et al.   Nature Communications

Gene expression dynamics during rapid organismal diversification in African cichlid fishes

(2020) Athimed El Taher et al.   Nature Ecology & Evolution

Selection shapes turnover and magnitude of sex-biased expression in Drosophila gonads

(2019) Carrie A. Whittle et al.   BMC EVOLUTIONARY BIOLOGY

Phenotypic sexual dimorphism is associated with genomic signatures of resolved sexual conflict

(2019) Alison E. Wright et al.   MOLECULAR ECOLOGY

The taxonomic diversity of the cichlid fish fauna of ancient Lake Tanganyika, East Africa

(2019) Fabrizia Ronco et al.   JOURNAL OF GREAT LAKES RESEARCH

Gene expression across mammalian organ development

(2019) Margarida Cardoso-Moreira et al.   NATURE

The genomic footprint of sexual conflict

(2019) Ahmed Sayadi et al.   Nature Ecology & Evolution

The Genomics of Sexual Conflict

(2018) Locke Rowe et al.   AMERICAN NATURALIST

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Evolution of Sex-Biased Gene Expression and Dosage Compensation in the Eye and Brain of Heliconius Butterflies

(2018) Ana Catalán et al.   MOLECULAR BIOLOGY AND EVOLUTION

Faster-X evolution of gene expression is driven by recessive adaptive cis -regulatory variation in Drosophila

(2018) Ana Llopart   MOLECULAR ECOLOGY

Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis ) genome

(2018) Ludovic Dutoit et al.   MOLECULAR ECOLOGY

Understanding explosive diversification through cichlid fish genomics

(2018) Walter Salzburger   NATURE REVIEWS GENETICS

Behavior-dependent cis regulation reveals genes and pathways associated with bower building in cichlid fishes

(2018) Ryan A. York et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unusual Diversity of Sex Chromosomes in African Cichlid Fishes

(2018) William J. Gammerdinger et al.   Genes

New genes often acquire male-specific functions but rarely become essential inDrosophila

(2017) Shu Kondo et al.   GENES & DEVELOPMENT

Sex-Biased Gene Expression

(2016) Sonja Grath et al.   Annual Review of Genetics

Data-driven hypothesis weighting increases detection power in genome-scale multiple testing

(2016) Nikolaos Ignatiadis et al.   NATURE METHODS

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Positive Selection Underlies Faster-Z Evolution of Gene Expression in Birds

(2015) Rebecca Dean et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sexual selection drives evolution and rapid turnover of male gene expression

(2015) Peter W. Harrison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecology and Evolution of the African Great Lakes and Their Faunas

(2014) Walter Salzburger et al.   Annual Review of Ecology Evolution and Systematics

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

ngsTools: methods for population genetics analyses from next-generation sequencing data

(2014) Matteo Fumagalli et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Comparative Transcriptomics in East African Cichlids Reveals Sex- and Species-Specific Expression and New Candidates for Sex Differentiation in Fishes

(2014) Astrid Böhne et al.   Genome Biology and Evolution

Bower-building behaviour is associated with increased sperm longevity in Tanganyikan cichlids

(2014) M. Morita et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Conflict on the Sex Chromosomes: Cause, Effect, and Complexity

(2014) J. E. Mank et al.   Cold Spring Harbor Perspectives in Biology

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

The evolutionary causes and consequences of sex-biased gene expression

(2013) John Parsch et al.   NATURE REVIEWS GENETICS

Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome

(2012) Björn Reinius et al.   BMC GENOMICS

Ecological opportunity and sexual selection together predict adaptive radiation

(2012) Catherine E. Wagner et al.   NATURE

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

W chromosome expression responds to female-specific selection

(2012) H. K. Moghadam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Faster-X Evolution of Gene Expression in Drosophila

(2012) Richard P. Meisel et al.   PLoS Genetics

A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu)

(2012) Takashi Kamiya et al.   PLoS Genetics

Emergence of male-biased genes on the chicken Z-chromosome: Sex-chromosome contrasts between male and female heterogametic systems

(2011) H. Ellegren   GENOME RESEARCH

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The Silkworm Z Chromosome Is Enriched in Testis-Specific Genes

(2009) K. P. Arunkumar et al.   GENETICS

Female promiscuity promotes the evolution of faster sperm in cichlid fishes

(2009) J. L. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The W, X, Y and Z of sex-chromosome dosage compensation

(2009) Judith E. Mank   TRENDS IN GENETICS

Comparative Analysis of Testis Protein Evolution in Rodents

(2008) L. M. Turner et al.   GENETICS

The interaction of sexually and naturally selected traits in the adaptive radiations of cichlid fishes

(2008) WALTER SALZBURGER   MOLECULAR ECOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH