Data-driven hypothesis weighting increases detection power in genome-scale multiple testing

Optimal multiple testing under a Gaussian prior on the effect sizes

(2015) Edgar Dobriban et al.   BIOMETRIKA

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

(2015) Fabian Grubert et al.   CELL

False Discovery Rate Regression: An Application to Neural Synchrony Detection in Primary Visual Cortex

(2015) James G. Scott et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Beyond the E-Value: Stratified Statistics for Protein Domain Prediction

(2015) Alejandro Ochoa et al.   PLoS Computational Biology

Single-index modulated multiple testing

(2014) Lilun Du et al.   ANNALS OF STATISTICS

Hyperplexing: A Method for Higher-Order Multiplexed Quantitative Proteomics Provides a Map of the Dynamic Response to Rapamycin in Yeast

(2012) N. Dephoure et al.   Science Signaling

Power-enhanced multiple decision functions controlling family-wise error and false discovery rates

(2011) Edsel A. Peña et al.   ANNALS OF STATISTICS

False discovery rates and copy number variation

(2011) Bradley Efron et al.   BIOMETRIKA

ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets

(2011) Alyssa C Frazee et al.   BMC BIOINFORMATICS

Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays

(2011) Daniel Bottomly et al.   PLoS One

Simultaneous Testing of Grouped Hypotheses: Finding Needles in Multiple Haystacks

(2010) T. Tony Cai et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

False Discovery Rate Control With Groups

(2010) James X. Hu et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Independent filtering increases detection power for high-throughput experiments

(2010) R. Bourgon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Were genome-wide linkage studies a waste of time? Exploiting candidate regions within genome-wide association studies

(2009) Yun J. Yoo et al.   GENETIC EPIDEMIOLOGY

Optimal weighting for false discovery rate control

(2009) Etienne Roquain et al.   Electronic Journal of Statistics

Unsupervised empirical Bayesian multiple testing with external covariates

(2008) Egil Ferkingstad et al.   Annals of Applied Statistics

A unified approach to false discovery rate estimation

(2008) Korbinian Strimmer   BMC BIOINFORMATICS