Behavior-dependent cis regulation reveals genes and pathways associated with bower building in cichlid fishes
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Title
Behavior-dependent cis regulation reveals genes and pathways associated with bower building in cichlid fishes
Authors
Keywords
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Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 115, Issue 47, Pages E11081-E11090
Publisher
Proceedings of the National Academy of Sciences
Online
2018-11-06
DOI
10.1073/pnas.1810140115
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Note: Only part of the references are listed.- Genome-wide protein phylogenies for four African cichlid species
- (2018) Ajay Ramakrishnan Varadarajan et al. BMC EVOLUTIONARY BIOLOGY
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- (2017) Joana I. Meier et al. Nature Communications
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- (2016) Nowlan H. Freese et al. BIOINFORMATICS
- High-throughput allele-specific expression across 250 environmental conditions
- (2016) Gregory A. Moyerbrailean et al. GENOME RESEARCH
- GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing, RNAseq and Microarray Data
- (2016) Shani Ben-Ari Fuchs et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
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- (2015) Matthew A. Conte et al. BMC GENOMICS
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- (2015) Sangeet Lamichhaney et al. NATURE GENETICS
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- (2015) Clemens Küpper et al. NATURE GENETICS
- Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake
- (2015) M. Malinsky et al. SCIENCE
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- (2015) D. H. Geschwind et al. SCIENCE
- SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
- (2014) Tae-Ho Lee et al. BMC GENOMICS
- Supergenes and Complex Phenotypes
- (2014) Tanja Schwander et al. CURRENT BIOLOGY
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- (2014) Angel Amores et al. GENETICS
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- (2014) R. Craig Albertson et al. MOLECULAR ECOLOGY
- The genomic substrate for adaptive radiation in African cichlid fish
- (2014) David Brawand et al. NATURE
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- (2013) Isabel Santos Magalhaes et al. PeerJ
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- (2012) Pablo Cingolani et al. FLY
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- (2012) N F Parnell et al. HEREDITY
- Loss of microRNAs in pyramidal neurons leads to specific changes in inhibitory synaptic transmission in the prefrontal cortex
- (2012) Ruby Hsu et al. MOLECULAR AND CELLULAR NEUROSCIENCE
- Origins of Shared Genetic Variation in African Cichlids
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- (2012) Jacob F. Degner et al. NATURE
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- (2012) Felicity C. Jones et al. NATURE
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- (2012) Xiang Zhou et al. NATURE GENETICS
- NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
- (2012) Ravi K. Patel et al. PLoS One
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- (2012) Joseph K. Pickrell et al. PLoS Genetics
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- (2011) P. Danecek et al. BIOINFORMATICS
- Adaptive seeds tame genomic sequence comparison
- (2011) S. M. Kielbasa et al. GENOME RESEARCH
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- (2011) Patrick T. McGrath et al. NATURE
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
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- (2009) H. Li et al. BIOINFORMATICS
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- (2009) H. Li et al. BIOINFORMATICS
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- (2009) Ken Chen et al. NATURE METHODS
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- Genes and Social Behavior
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