Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis ) genome

Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting

(2017) Ludovic Dutoit et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The transcriptional architecture of phenotypic dimorphism

(2017) Judith E. Mank   Nature Ecology & Evolution

Detection of Allelic Frequency Differences between the Sexes in Humans: A Signature of Sexually Antagonistic Selection

(2016) Elise A. Lucotte et al.   Genome Biology and Evolution

Determinants of genetic diversity

(2016) Hans Ellegren et al.   NATURE REVIEWS GENETICS

A Genomic Map of the Effects of Linked Selection in Drosophila

(2016) Eyal Elyashiv et al.   PLoS Genetics

Sex-Specific Selection and Sex-Biased Gene Expression in Humans and Flies

(2016) Changde Cheng et al.   PLoS Genetics

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers

(2015) Reto Burri et al.   GENOME RESEARCH

Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill–Robertson Interference, in an Avian System

(2015) Paulina Bolívar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting balancing selection in genomes: limits and prospects

(2015) Anna Fijarczyk et al.   MOLECULAR ECOLOGY

Whole-genome resequencing of extreme phenotypes in collared flycatchers highlights the difficulty of detecting quantitative trait loci in natural populations

(2015) Marty Kardos et al.   Molecular Ecology Resources

Sexual selection drives evolution and rapid turnover of male gene expression

(2015) Peter W. Harrison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data

(2015) Alexander Nater et al.   SYSTEMATIC BIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

The impact of linked selection on plant genomic variation

(2014) T. Slotte   Briefings in Functional Genomics

Sexually antagonistic polymorphism in simultaneous hermaphrodites

(2014) Crispin Y. Jordan et al.   EVOLUTION

Balancing Selection in Species with Separate Sexes: Insights from Fisher's Geometric Model

(2014) T. Connallon et al.   GENETICS

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

(2014) Takeshi Kawakami et al.   MOLECULAR ECOLOGY

Sex-Biased Gene Expression and Sexual Conflict throughout Development: Table 1.

(2014) Fiona C. Ingleby et al.   Cold Spring Harbor Perspectives in Biology

A Model-Based Approach for Identifying Signatures of Ancient Balancing Selection in Genetic Data

(2014) Michael DeGiorgio et al.   PLoS Genetics

Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination

(2013) Carina F Mugal et al.   BMC GENOMICS

Transcriptome Sequencing Reveals the Character of Incomplete Dosage Compensation across Multiple Tissues in Flycatchers

(2013) Severin Uebbing et al.   Genome Biology and Evolution

Genomic signatures of selection at linked sites: unifying the disparity among species

(2013) Asher D. Cutter et al.   NATURE REVIEWS GENETICS

Masculinization of Gene Expression Is Associated with Exaggeration of Male Sexual Dimorphism

(2013) Marie A. Pointer et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

A General Population Genetic Framework for Antagonistic Selection That Accounts for Demography and Recurrent Mutation

(2012) T. Connallon et al.   GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The recombination landscape of the zebra finch Taeniopygia guttata genome

(2010) N. Backstrom et al.   GENOME RESEARCH

The Sexually Antagonistic Genes of Drosophila melanogaster

(2010) Paolo Innocenti et al.   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Targets of Balancing Selection in the Human Genome

(2009) A. M. Andres et al.   MOLECULAR BIOLOGY AND EVOLUTION

Introduction. Evolutionary dynamics of wild populations: the use of long-term pedigree data

(2008) L.E.B Kruuk et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES