Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila

(2011) Ram Pandey et al.   BMC GENETICS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

(2010) Fereydoun Hormozdiari et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes

(2010) Emmanuelle Lerat et al.   GENE

A New Test for Detecting Recent Positive Selection that is Free from the Confounding Impacts of Demography

(2010) H. Li   MOLECULAR BIOLOGY AND EVOLUTION

Population Genomics of Transposable Elements in Drosophila melanogaster

(2010) D. A. Petrov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Limitations of next-generation genome sequence assembly

(2010) Can Alkan et al.   NATURE METHODS

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data

(2010) Anna-Sophie Fiston-Lavier et al.   NUCLEIC ACIDS RESEARCH

Transposable elements in natural populations of Drosophila melanogaster

(2010) Y. C. G. Lee et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary

(2009) Colin D. Malone et al.   CELL

Small RNAs as Guardians of the Genome

(2009) Colin D. Malone et al.   CELL

The adaptive role of transposable elements in the Drosophila genome

(2009) Josefa González et al.   GENE

Population Genomic Inferences from Sparse High-Throughput Sequencing of Two Populations of Drosophila melanogaster

(2009) Timothy B. Sackton et al.   Genome Biology and Evolution

Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes

(2009) Carolina Bartolomé et al.   GENOME BIOLOGY

Molecular Population Genetics of Drosophila Subtelomeric DNA

(2008) Jennifer A. Anderson et al.   GENETICS

Active Miniature Transposons From a Plant Genome and Its Nonrecombining Y Chromosome

(2008) R. Bergero et al.   GENETICS

Contrasting Patterns of Transposable-Element Insertion Polymorphism and Nucleotide Diversity in Autotetraploid and Allotetraploid Arabidopsis Species

(2008) K. M. Hazzouri et al.   GENETICS

The Effects of Recombination Rate on the Distribution and Abundance of Transposable Elements

(2008) E. S. Dolgin et al.   GENETICS

High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster

(2008) Josefa González et al.   PLOS BIOLOGY