Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution
Authors
Keywords
-
Journal
eLife
Volume 6, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2017-07-11
DOI
10.7554/elife.25762
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions
- (2016) Taiji Kawakatsu et al. CELL
- Direct interrogation of the role of H3K9 in metazoan heterochromatin function
- (2016) Taylor J.R. Penke et al. GENES & DEVELOPMENT
- TALE-light imaging reveals maternally guided, H3K9me2/3-independent emergence of functional heterochromatin inDrosophilaembryos
- (2016) Kai Yuan et al. GENES & DEVELOPMENT
- Horizontal Transfer Can Drive a Greater Transposable Element Load in Large Populations
- (2016) Sam B. Groth et al. JOURNAL OF HEREDITY
- The industrial melanism mutation in British peppered moths is a transposable element
- (2016) Arjen E. van’t Hof et al. NATURE
- Comparative Genomic Analyses Provide New Insights into the Evolutionary Dynamics of Heterochromatin in Drosophila
- (2016) Ruggiero Caizzi et al. PLoS Genetics
- The Arabidopsis thaliana mobilome and its impact at the species level
- (2016) Leandro Quadrana et al. eLife
- Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation
- (2016) Tim Stuart et al. eLife
- The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic
- (2016) Joel M Swenson et al. eLife
- KMC 2: fast and resource-frugal k-mer counting
- (2015) Sebastian Deorowicz et al. BIOINFORMATICS
- Do larger genomes contain more diverse transposable elements?
- (2015) Tyler A Elliott et al. BMC EVOLUTIONARY BIOLOGY
- Targeting of P-Element Reporters to Heterochromatic Domains by Transposable Element 1360 in Drosophila melanogaster
- (2015) K. L. Huisinga et al. GENETICS
- The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
- (2015) Justin B. Lack et al. GENETICS
- Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates
- (2015) Domitille Chalopin et al. Genome Biology and Evolution
- The Release 6 reference sequence of theDrosophila melanogastergenome
- (2015) Roger A. Hoskins et al. GENOME RESEARCH
- Fitting Linear Mixed-Effects Models Usinglme4
- (2015) Douglas Bates et al. Journal of Statistical Software
- Unique transposon landscapes are pervasive acrossDrosophila melanogastergenomes
- (2015) Reazur Rahman et al. NUCLEIC ACIDS RESEARCH
- Tempo and Mode of Transposable Element Activity in Drosophila
- (2015) Robert Kofler et al. PLoS Genetics
- The Role of piRNA-Mediated Epigenetic Silencing in the Population Dynamics of Transposable Elements in Drosophila melanogaster
- (2015) Yuh Chwen G. Lee PLoS Genetics
- DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
- (2015) Manu J Dubin et al. eLife
- The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
- (2015) Justin B. Lack et al. GENETICS
- Population Genomics of Transposable Elements inDrosophila
- (2014) Maite G. Barrón et al. Annual Review of Genetics
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Mating system shifts and transposable element evolution in the plant genus Capsella
- (2014) J Ågren et al. BMC GENOMICS
- Gene Expression Variation in Drosophila melanogaster Due to Rare Transposable Element Insertion Alleles of Large Effect
- (2014) J. M. Cridland et al. GENETICS
- Genomic Distribution of H3K9me2 and DNA Methylation in a Maize Genome
- (2014) Patrick T. West et al. PLoS One
- HP1a: a structural chromosomal protein regulating transcription
- (2014) Joel C. Eissenberg et al. TRENDS IN GENETICS
- Euchromatic Transposon Insertions Trigger Production of Novel Pi- and Endo-siRNAs at the Target Sites in the Drosophila Germline
- (2014) Sergey Shpiz et al. PLoS Genetics
- A Transposable Element Insertion Confers Xenobiotic Resistance in Drosophila
- (2014) Lidia Mateo et al. PLoS Genetics
- Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state
- (2013) A. Le Thomas et al. GENES & DEVELOPMENT
- An Age-of-Allele Test of Neutrality for Transposable Element Insertions
- (2013) J. P. Blumenstiel et al. GENETICS
- Analysis of piRNA-Mediated Silencing of Active TEs in Drosophila melanogaster Suggests Limits on the Evolution of Host Genome Defense
- (2013) Erin S. Kelleher et al. MOLECULAR BIOLOGY AND EVOLUTION
- Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources
- (2013) Julie M. Cridland et al. MOLECULAR BIOLOGY AND EVOLUTION
- Reversal of an ancient sex chromosome to an autosome in Drosophila
- (2013) Beatriz Vicoso et al. NATURE
- Patterns of population epigenomic diversity
- (2013) Robert J. Schmitz et al. NATURE
- Position-Effect Variegation, Heterochromatin Formation, and Gene Silencing in Drosophila
- (2013) S. C. R. Elgin et al. Cold Spring Harbor Perspectives in Biology
- Genome of Drosophila suzukii , the Spotted Wing Drosophila
- (2013) Joanna C. Chiu et al. G3-Genes Genomes Genetics
- Maternal Depletion of Piwi, a Component of the RNAi System, Impacts Heterochromatin Formation in Drosophila
- (2013) Tingting Gu et al. PLoS Genetics
- Transcriptional Silencing of Transposons by Piwi and Maelstrom and Its Impact on Chromatin State and Gene Expression
- (2012) Grzegorz Sienski et al. CELL
- Inheritance and memory of stress-induced epigenome change: roles played by the ATF-2 family of transcription factors
- (2012) Ki-Hyeon Seong et al. GENES TO CELLS
- A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence
- (2012) T. T. Hu et al. GENOME RESEARCH
- High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
- (2012) P. Batut et al. GENOME RESEARCH
- Estimating Divergence Dates and Substitution Rates in the Drosophila Phylogeny
- (2012) Darren J. Obbard et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Drosophila melanogaster Genetic Reference Panel
- (2012) Trudy F. C. Mackay et al. NATURE
- Ectopic assembly of heterochromatin in Drosophila melanogaster triggered by transposable elements
- (2012) M. F. Sentmanat et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Drosophila Interspecific Hybrids Phenocopy piRNA-Pathway Mutants
- (2012) Erin S. Kelleher et al. PLOS BIOLOGY
- Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
- (2012) Robert Kofler et al. PLoS Genetics
- Genomic Variation and Its Impact on Gene Expression in Drosophila melanogaster
- (2012) Andreas Massouras et al. PLoS Genetics
- Spreading of Heterochromatin Is Limited to Specific Families of Maize Retrotransposons
- (2012) Steven R. Eichten et al. PLoS Genetics
- The Many Landscapes of Recombination in Drosophila melanogaster
- (2012) Josep M. Comeron et al. PLoS Genetics
- Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture
- (2012) John E. Pool et al. PLoS Genetics
- Epigenetic interplay between mouse endogenous retroviruses and host genes
- (2012) Rita Rebollo et al. GENOME BIOLOGY
- Measuring reproducibility of high-throughput experiments
- (2011) Qunhua Li et al. Annals of Applied Statistics
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- A cis-regulatory map of the Drosophila genome
- (2011) Nicolas Nègre et al. NATURE
- Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis
- (2011) Ikhlak Ahmed et al. NUCLEIC ACIDS RESEARCH
- Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
- (2011) J. D. Hollister et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolution of Sex Chromosomes in Insects
- (2010) Vera B. Kaiser et al. Annual Review of Genetics
- The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata
- (2010) Steven Lockton et al. BMC EVOLUTIONARY BIOLOGY
- A Brief History of the Status of Transposable Elements: From Junk DNA to Major Players in Evolution
- (2010) C. Biemont GENETICS
- Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
- (2010) N. C. Riddle et al. GENOME RESEARCH
- Population Genomics of Transposable Elements in Drosophila melanogaster
- (2010) D. A. Petrov et al. MOLECULAR BIOLOGY AND EVOLUTION
- Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
- (2010) Peter V. Kharchenko et al. NATURE
- The developmental transcriptome of Drosophila melanogaster
- (2010) Brenton R. Graveley et al. NATURE
- Small RNA sorting: matchmaking for Argonautes
- (2010) Benjamin Czech et al. NATURE REVIEWS GENETICS
- An assessment of histone-modification antibody quality
- (2010) Thea A Egelhofer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Transposable elements in natural populations of Drosophila melanogaster
- (2010) Y. C. G. Lee et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
- (2010) et al. SCIENCE
- The piRNA pathway: a fly's perspective on the guardian of the genome
- (2010) Kirsten-André Senti et al. TRENDS IN GENETICS
- Evolutionary dynamics of transposable elements in a small RNA world
- (2010) Justin P. Blumenstiel TRENDS IN GENETICS
- Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus
- (2010) Joshua M. Schmidt et al. PLoS Genetics
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen
- (2009) R. Keith Slotkin et al. CELL
- Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
- (2009) J. D. Hollister et al. GENOME RESEARCH
- Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
- (2009) Ken Naito et al. NATURE
- Quantifying dominance and deleterious effect on human disease genes
- (2009) Naoki Osada et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes
- (2008) ELIE S. DOLGIN et al. Genetics Research
- A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice
- (2008) Alexei A. Aravin et al. MOLECULAR CELL
- An endogenous small interfering RNA pathway in Drosophila
- (2008) Benjamin Czech et al. NATURE
- Transposable elements and the evolution of regulatory networks
- (2008) Cédric Feschotte NATURE REVIEWS GENETICS
- Molecular Landscape of Modified Histones in Drosophila Heterochromatic Genes and Euchromatin-Heterochromatin Transition Zones
- (2008) Jiro C. Yasuhara et al. PLoS Genetics
- Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata
- (2008) S. Lockton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing
- (2008) J. Brennecke et al. SCIENCE
- Endogenous siRNAs Derived from Transposons and mRNAs in Drosophila Somatic Cells
- (2008) M. Ghildiyal et al. SCIENCE
- Conserved themes in small-RNA-mediated transposon control
- (2008) Angélique Girard et al. TRENDS IN CELL BIOLOGY
- High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster
- (2008) Josefa González et al. PLOS BIOLOGY
- Argonaute proteins: key players in RNA silencing
- (2007) Gyorgy Hutvagner et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search