Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes

ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data

(2015) Chuan Jiang et al.   BMC BIOINFORMATICS

Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution

(2015) Wilson Leung et al.   G3-Genes Genomes Genetics

Genomics of Ecological Adaptation in Cactophilic Drosophila

(2015) Yolanda Guillén et al.   Genome Biology and Evolution

Population Genomics of Transposable Elements inDrosophila

(2014) Maite G. Barrón et al.   Annual Review of Genetics

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

(2014) Z.-X. Chen et al.   GENOME RESEARCH

Reconstructing complex regions of genomes using long-read sequencing technology

(2014) J. Huddleston et al.   GENOME RESEARCH

Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements

(2014) Rajiv C. McCoy et al.   PLoS One

How do mammalian transposons induce genetic variation? A conceptual framework

(2013) Keiko Akagi et al.   BIOESSAYS

The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads

(2013) Lucia Natali et al.   BMC GENOMICS

Linking Genomics and Ecology to Investigate the Complex Evolution of an Invasive Drosophila Pest

(2013) Lino Ometto et al.   Genome Biology and Evolution

Drosophila americana as a Model Species for Comparative Studies on the Molecular Basis of Phenotypic Variation

(2013) Nuno A. Fonseca et al.   Genome Biology and Evolution

Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources

(2013) Julie M. Cridland et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome of Drosophila suzukii , the Spotted Wing Drosophila

(2013) Joanna C. Chiu et al.   G3-Genes Genomes Genetics

Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans

(2012) Qi Zhou et al.   BMC GENOMICS

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence

(2012) T. T. Hu et al.   GENOME RESEARCH

The limitations of draft assemblies for understanding prokaryotic adaptation and evolution

(2012) N. Ricker et al.   GENOMICS

Monophyly, divergence times, and evolution of host plant use inferred from a revised phylogeny of the Drosophila repleta species group

(2012) Deodoro C.S.G. Oliveira et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in Drosophila

(2012) Q. Zhou et al.   SCIENCE

Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

(2012) Robert Kofler et al.   PLoS Genetics

The Many Landscapes of Recombination in Drosophila melanogaster

(2012) Josep M. Comeron et al.   PLoS Genetics

GAGE: A critical evaluation of genome assemblies and assembly algorithms

(2011) S. L. Salzberg et al.   GENOME RESEARCH

Comparing De Novo Genome Assembly: The Long and Short of It

(2011) Giuseppe Narzisi et al.   PLoS One

Population Genomics of Transposable Elements in Drosophila melanogaster

(2010) D. A. Petrov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Limitations of next-generation genome sequence assembly

(2010) Can Alkan et al.   NATURE METHODS

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data

(2010) Anna-Sophie Fiston-Lavier et al.   NUCLEIC ACIDS RESEARCH

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

(2009) Cédric Feschotte et al.   Genome Biology and Evolution

Population Genomic Inferences from Sparse High-Throughput Sequencing of Two Populations of Drosophila melanogaster

(2009) Timothy B. Sackton et al.   Genome Biology and Evolution

The Transposon Galileo Generates Natural Chromosomal Inversions in Drosophila by Ectopic Recombination

(2009) Alejandra Delprat et al.   PLoS One

Polytene Chromosomal Maps of 11 Drosophila Species: The Order of Genomic Scaffolds Inferred From Genetic and Physical Maps

(2008) S. W. Schaeffer et al.   GENETICS

A universal classification of eukaryotic transposable elements implemented in Repbase

(2008) Vladimir V. Kapitonov et al.   NATURE REVIEWS GENETICS

Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes

(2008) Hsiao-Pei Yang et al.   GENOME BIOLOGY