- Home
- Publications
- Publication Search
- Publication Details
Title
Biochemical Tools for Tracking Proteolysis
Authors
Keywords
-
Journal
JOURNAL OF PROTEOME RESEARCH
Volume -, Issue -, Pages -
Publisher
American Chemical Society (ACS)
Online
2021-09-08
DOI
10.1021/acs.jproteome.1c00289
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- PDX models reflect the proteome landscape of pediatric acute lymphoblastic leukemia but divert in select pathways
- (2021) Anuli C. Uzozie et al. JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH
- Proteomics and Imaging in Crohn’s Disease: TAILS of Unlikely Allies
- (2020) Barbara Mainoli et al. TRENDS IN PHARMACOLOGICAL SCIENCES
- Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project
- (2020) Gilbert S. Omenn et al. JOURNAL OF PROTEOME RESEARCH
- Multiplexed Probing of Proteolytic Enzymes Using Mass Cytometry-Compatible Activity-Based Probes
- (2020) Marcin Poreba et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- SARS-CoV-2 Mpro inhibitors and activity-based probes for patient-sample imaging
- (2020) Wioletta Rut et al. Nature Chemical Biology
- Deep profiling of protease substrate specificity enabled by dual random and scanned human proteome substrate phage libraries
- (2020) Jie Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Activity profiling and crystal structures of inhibitor-bound SARS-CoV-2 papain-like protease: A framework for anti–COVID-19 drug design
- (2020) Wioletta Rut et al. Science Advances
- A Close Look at BACE1 Inhibitors for Alzheimer’s Disease Treatment
- (2019) Brati Das et al. CNS DRUGS
- Do BACE inhibitor failures in Alzheimer’s patients challenge the amyloid hypothesis of the disease?
- (2019) Francesco Panza et al. Expert Review of Neurotherapeutics
- Hypotensive Snake Venom Components—A Mini-Review
- (2019) Orsolya Péterfi et al. MOLECULES
- N-Terminomics/TAILS Profiling of Proteases and Their Substrates in Ulcerative Colitis
- (2019) Marilyn H. Gordon et al. ACS Chemical Biology
- Protease Substrate Identification Using N-terminomics
- (2019) Shu Yue Luo et al. ACS Chemical Biology
- Matrix Metalloproteases as Influencers of the Cells’ Social Media
- (2019) Daniel Young et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Sensitive determination of proteolytic proteoforms in limited microscale proteome samples
- (2019) Samuel SH Weng et al. MOLECULAR & CELLULAR PROTEOMICS
- N-Terminomics/TAILS Profiling of Macrophages after Chemical Inhibition of Legumain
- (2019) Bethany M. Anderson et al. BIOCHEMISTRY
- Subtiligase-Catalyzed Peptide Ligation
- (2019) Amy M. Weeks et al. CHEMICAL REVIEWS
- Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage
- (2019) Parker G. Jobin et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Utilization of the Proteome Data Deposited in SRMAtlas for Validating the Existence of the Human Missing Proteins in GPM
- (2019) Amr Elguoshy et al. JOURNAL OF PROTEOME RESEARCH
- The neXtProt knowledgebase in 2020: data, tools and usability improvements
- (2019) Monique Zahn-Zabal et al. NUCLEIC ACIDS RESEARCH
- Application of a chemical probe to detect neutrophil elastase activation during inflammatory bowel disease
- (2019) Bethany M. Anderson et al. Scientific Reports
- Simple, scalable, and ultrasensitive tip-based identification of protease substrates
- (2018) Gerta Shema et al. MOLECULAR & CELLULAR PROTEOMICS
- Identification of a S. aureus virulence factor by activity-based protein profiling (ABPP)
- (2018) Christian S. Lentz et al. Nature Chemical Biology
- Highly multiplexed and quantitative cell-surface protein profiling using genetically barcoded antibodies
- (2018) Samuel B. Pollock et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Antimalarial proteasome inhibitor reveals collateral sensitivity from intersubunit interactions and fitness cost of resistance
- (2018) Laura A. Kirkman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inherited diseases caused by mutations in cathepsin protease genes
- (2017) Stephanie Ketterer et al. FEBS Journal
- Identification and Validation of Human Missing Proteins and Peptides in Public Proteome Databases: Data Mining Strategy
- (2017) Amr Elguoshy et al. JOURNAL OF PROTEOME RESEARCH
- Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease
- (2017) Michael D. Mayers et al. JOURNAL OF PROTEOME RESEARCH
- PARL mediates Smac proteolytic maturation in mitochondria to promote apoptosis
- (2017) Shotaro Saita et al. NATURE CELL BIOLOGY
- Engineering peptide ligase specificity by proteomic identification of ligation sites
- (2017) Amy M Weeks et al. Nature Chemical Biology
- Synthesis of a HyCoSuL peptide substrate library to dissect protease substrate specificity
- (2017) Marcin Poreba et al. Nature Protocols
- The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
- (2017) Neil D Rawlings et al. NUCLEIC ACIDS RESEARCH
- Immunoproteasome functions explained by divergence in cleavage specificity and regulation
- (2017) Michael B Winter et al. eLife
- Reprogramming Caspase-7 Specificity by Regio-Specific Mutations and Selection Provides Alternate Solutions for Substrate Recognition
- (2016) Maureen E. Hill et al. ACS Chemical Biology
- Legumain is activated in macrophages during pancreatitis
- (2016) Laura E. Edgington-Mitchell et al. AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY
- Hydrophobic Tagging-Assisted N-Termini Enrichment for In-Depth N-Terminome Analysis
- (2016) Lingfan Chen et al. ANALYTICAL CHEMISTRY
- Structure and function of legumain in health and disease
- (2016) Elfriede Dall et al. BIOCHIMIE
- Synthesis and in Vitro and in Vivo Evaluation of MMP-12 Selective Optical Probes
- (2016) Thomas Bordenave et al. BIOCONJUGATE CHEMISTRY
- Cacidases: caspases can cleave after aspartate, glutamate and phosphoserine residues
- (2016) J E Seaman et al. CELL DEATH AND DIFFERENTIATION
- Active site specificity profiling of the matrix metalloproteinase family: Proteomic identification of 4300 cleavage sites by nine MMPs explored with structural and synthetic peptide cleavage analyses
- (2016) Ulrich Eckhard et al. MATRIX BIOLOGY
- A Clinical Wide-Field Fluorescence Endoscopic Device for Molecular Imaging Demonstrating Cathepsin Protease Activity in Colon Cancer
- (2016) Steven Sensarn et al. MOLECULAR IMAGING AND BIOLOGY
- Structure- and function-based design of Plasmodium-selective proteasome inhibitors
- (2016) Hao Li et al. NATURE
- Quantitative MS-based enzymology of caspases reveals distinct protein substrate specificities, hierarchies, and cellular roles
- (2016) Olivier Julien et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Optical imaging of MMP-12 active form in inflammation and aneurysm
- (2016) Mahmoud Razavian et al. Scientific Reports
- TAILS N-Terminomics and Proteomics Show Protein Degradation Dominates over Proteolytic Processing by Cathepsins in Pancreatic Tumors
- (2016) Anna Prudova et al. Cell Reports
- Non-invasive Imaging of Idiopathic Pulmonary Fibrosis Using Cathepsin Protease Probes
- (2016) Nimali P. Withana et al. Scientific Reports
- Quantitative Profiling for Substrates of the Mitochondrial Presequence Processing Protease Reveals a Set of Nonsubstrate Proteins Increased upon Proteotoxic Stress
- (2015) Julia M. Burkhart et al. JOURNAL OF PROTEOME RESEARCH
- Snake venom serine proteinases specificity mapping by proteomic identification of cleavage sites
- (2015) André Zelanis et al. Journal of Proteomics
- One-step site-specific modification of native proteins with 2-pyridinecarboxyaldehydes
- (2015) James I MacDonald et al. Nature Chemical Biology
- The iceLogo web server and SOAP service for determining protein consensus sequences
- (2015) Davy Maddelein et al. NUCLEIC ACIDS RESEARCH
- An improved workflow for quantitative N-terminal charge-based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events inArabidopsis thaliana
- (2015) A. Saskia Venne et al. PROTEOMICS
- The paracaspase MALT1 cleaves HOIL1 reducing linear ubiquitination by LUBAC to dampen lymphocyte NF-κB signalling
- (2015) Theo Klein et al. Nature Communications
- A new transcriptional role for matrix metalloproteinase-12 in antiviral immunity
- (2014) David J Marchant et al. NATURE MEDICINE
- Design of ultrasensitive probes for human neutrophil elastase through hybrid combinatorial substrate library profiling
- (2014) P. Kasperkiewicz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Macrophage Matrix Metalloproteinase-12 Dampens Inflammation and Neutrophil Influx in Arthritis
- (2014) Caroline L. Bellac et al. Cell Reports
- Network Analyses Reveal Pervasive Functional Regulation Between Proteases in the Human Protease Web
- (2014) Nikolaus Fortelny et al. PLOS BIOLOGY
- CTSCand Papillon-Lefèvre syndrome: detection of recurrent mutations in Hungarian patients, a review of published variants and database update
- (2014) Nikoletta Nagy et al. Molecular Genetics & Genomic Medicine
- Sumoylation: A Regulatory Protein Modification in Health and Disease
- (2013) Annette Flotho et al. Annual Review of Biochemistry
- Novel Highly Sensitive, Specific, and Straightforward Strategy for Comprehensive N-Terminal Proteomics Reveals Unknown Substrates of the Mitochondrial Peptidase Icp55
- (2013) A. Saskia Venne et al. JOURNAL OF PROTEOME RESEARCH
- Proteomic protease specificity profiling of clostridial collagenases reveals their intrinsic nature as dedicated degraders of collagen
- (2013) Ulrich Eckhard et al. Journal of Proteomics
- Missing the target: matrix metalloproteinase antitargets in inflammation and cancer
- (2013) Antoine Dufour et al. TRENDS IN PHARMACOLOGICAL SCIENCES
- Application of FRET probes in the analysis of neuronal plasticity
- (2013) Yoshibumi Ueda et al. Frontiers in Neural Circuits
- In Vivo Imaging of Matrix Metalloproteinase 12 and Matrix Metalloproteinase 13 Activities in the Mouse Model of Collagen-Induced Arthritis
- (2013) Ngee Han Lim et al. Arthritis & Rheumatology
- Functional Imaging of Legumain in Cancer Using a New Quenched Activity-Based Probe
- (2012) Laura E. Edgington et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The DegraBase: A Database of Proteolysis in Healthy and Apoptotic Human Cells
- (2012) Emily D. Crawford et al. MOLECULAR & CELLULAR PROTEOMICS
- Global identification of peptidase specificity by multiplex substrate profiling
- (2012) Anthony J O'Donoghue et al. NATURE METHODS
- Quantitative profiling of caspase-cleaved substrates reveals different drug-induced and cell-type patterns in apoptosis
- (2012) K. Shimbo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global kinetic analysis of proteolysis via quantitative targeted proteomics
- (2012) N. J. Agard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Calpain-5 Mutations Cause Autoimmune Uveitis, Retinal Neovascularization, and Photoreceptor Degeneration
- (2012) Vinit B. Mahajan et al. PLoS Genetics
- Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates
- (2011) Oded Kleifeld et al. Nature Protocols
- Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry
- (2011) Oliver Schilling et al. Nature Protocols
- Broad Coverage Identification of Multiple Proteolytic Cleavage Site Sequences in Complex High Molecular Weight Proteins Using Quantitative Proteomics as a Complement to Edman Sequencing
- (2010) Alain Doucet et al. MOLECULAR & CELLULAR PROTEOMICS
- Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products
- (2010) Oded Kleifeld et al. NATURE BIOTECHNOLOGY
- New Strategies for Fluorescent Probe Design in Medical Diagnostic Imaging
- (2009) Hisataka Kobayashi et al. CHEMICAL REVIEWS
- Methods for the proteomic identification of protease substrates
- (2009) Nicholas J Agard et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Proteome-wide Substrate Analysis Indicates Substrate Exclusion as a Mechanism to Generate Caspase-7VersusCaspase-3 Specificity
- (2009) Dieter Demon et al. MOLECULAR & CELLULAR PROTEOMICS
- Membrane-bound FRET probe visualizes MMP12 activity in pulmonary inflammation
- (2009) Amanda Cobos-Correa et al. Nature Chemical Biology
- Structural and kinetic determinants of protease substrates
- (2009) John C Timmer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Global Sequencing of Proteolytic Cleavage Sites in Apoptosis by Specific Labeling of Protein N Termini
- (2008) Sami Mahrus et al. CELL
- Analysis of Protein Processing by N-terminal Proteomics Reveals Novel Species-specific Substrate Determinants of Granzyme B Orthologs
- (2008) Petra Van Damme et al. MOLECULAR & CELLULAR PROTEOMICS
- Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
- (2008) Oliver Schilling et al. NATURE BIOTECHNOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started