Development and testing of a combined species SNP array for the European seabass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata)

Genome-wide analysis clarifies the population genetic structure of wild gilthead sea bream (Sparus aurata)

(2021) Francesco Maroso et al.   PLoS One

High-Throughput Single Nucleotide Polymorphism (SNP) Discovery and Validation Through Whole-Genome Resequencing in Nile Tilapia (Oreochromis niloticus)

(2020) José M. Yáñez et al.   MARINE BIOTECHNOLOGY

Suitability of Single-Nucleotide Polymorphism Arrays Versus Genotyping-By-Sequencing for Genebank Genomics in Wheat

(2020) Jianting Chu et al.   Frontiers in Plant Science

Harnessing genomics to fast-track genetic improvement in aquaculture

(2020) Ross D. Houston et al.   NATURE REVIEWS GENETICS

Development and Validation of an Open Access SNP Array for Nile Tilapia (Oreochromis niloticus)

(2020) Carolina Peñaloza et al.   G3-Genes Genomes Genetics

Combining Multiple Approaches and Models to Dissect the Genetic Architecture of Resistance to Infections in Fish

(2020) Clémence Fraslin et al.   Frontiers in Genetics

Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip

(2020) Ronan Griot et al.   AQUACULTURE

Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters

(2019) Kyall R. Zenger et al.   Frontiers in Genetics

Design and characterization of an 87k SNP genotyping array for Arctic charr (Salvelinus alpinus)

(2019) Cameron M. Nugent et al.   PLoS One

Scanning of Genetic Variants and Genetic Mapping of Phenotypic Traits in Gilthead Sea Bream Through ddRAD Sequencing

(2019) Dimitrios Kyriakis et al.   Frontiers in Genetics

GWAS identifies genetic variants associated with omega-3 fatty acid composition of Atlantic salmon fillets

(2019) Siri S. Horn et al.   AQUACULTURE

OUP accepted manuscript

(2018)   BIOINFORMATICS

Genetics of resistance to photobacteriosis in gilthead sea bream (Sparus aurata) using 2b-RAD sequencing

(2018) Muhammad L Aslam et al.   BMC GENETICS

Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies

(2018) Dorcus Kholofelo Malomane et al.   BMC GENOMICS

Measuring Genetic Differentiation from Pool-seq Data

(2018) Valentin Hivert et al.   GENETICS

Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.

(2018) Sara Faggion et al.   HEREDITY

Development and Validation of 58K SNP-Array and High-Density Linkage Map in Nile Tilapia (O. niloticus)

(2018) Rajesh Joshi et al.   Frontiers in Genetics

Applications of genotyping by sequencing in aquaculture breeding and genetics

(2017) Diego Robledo et al.   Reviews in Aquaculture

Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas)

(2017) Haigang Qi et al.   PLoS One

Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence

(2017) Qifan Zeng et al.   Scientific Reports

Genetic characterization of wild and farmed European seabass in the Adriatic sea: assessment of farmed escapees using a Bayesian approach

(2016) Tanja Šegvić-Bubić et al.   ICES JOURNAL OF MARINE SCIENCE

Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations

(2016) J. M. Yáñez et al.   Molecular Ecology Resources

An integrated genomic approach for the study of mandibular prognathism in the European seabass (Dicentrarchus labrax)

(2016) Massimiliano Babbucci et al.   Scientific Reports

Genomic Prediction of Resistance to Pasteurellosis in Gilthead Sea Bream (Sparus aurata) Using 2b-RAD Sequencing

(2016) C. Palaiokostas et al.   G3-Genes Genomes Genetics

Range-wide population structure of European sea bassDicentrarchus labrax

(2015) Erika L. Souche et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Prevalence and survival of escaped European seabass Dicentrarchus labrax in Cyprus identified using genetic markers

(2015) C Brown et al.   Aquaculture Environment Interactions

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)

(2014) Jian Xu et al.   BMC GENOMICS

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

(2014) Ross D Houston et al.   BMC GENOMICS

The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout

(2014) Y. Palti et al.   Molecular Ecology Resources

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

Optimizing the creation of base populations for aquaculture breeding programs using phenotypic and genomic data and its consequences on genetic progress

(2014) Jesús Fernández et al.   Frontiers in Genetics

SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it

(2013) Joseph Lachance et al.   BIOESSAYS

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): population-level associations between markers and trait

(2009) Thomas Moen et al.   BMC GENOMICS

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

Major Quantitative Trait Loci Affect Resistance to Infectious Pancreatic Necrosis in Atlantic Salmon (Salmo salar)

(2008) R. D. Houston et al.   GENETICS