Design and characterization of an 87k SNP genotyping array for Arctic charr (Salvelinus alpinus)

Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon

(2018) Diego Robledo et al.   G3-Genes Genomes Genetics

The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly

(2018) Kris A. Christensen et al.   PLoS One

Genomic Prediction Accuracy for Resistance Against Piscirickettsia salmonis in Farmed Rainbow Trout

(2017) Grazyella M. Yoshida et al.   G3-Genes Genomes Genetics

Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters ( Crassostrea gigas and Ostrea edulis )

(2017) Alejandro P. Gutierrez et al.   G3-Genes Genomes Genetics

Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations

(2016) J. M. Yáñez et al.   Molecular Ecology Resources

A SNP Based Linkage Map of the Arctic Charr ( Salvelinus alpinus ) Genome Provides Insights into the Diploidization Process After Whole Genome Duplication

(2016) Cameron M. Nugent et al.   G3-Genes Genomes Genetics

Accuracy of Assignment of Atlantic Salmon (Salmo salar L.) to Rivers and Regions in Scotland and Northeast England Based on Single Nucleotide Polymorphism (SNP) Markers

(2016) John Gilbey et al.   PLoS One

Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes

(2015) Katharina Correa et al.   BMC GENOMICS

The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males

(2015) Fernando Ayllon et al.   PLoS Genetics

Genome-Wide Association Study (GWAS) for Growth Rate and Age at Sexual Maturation in Atlantic Salmon (Salmo salar)

(2015) Alejandro P. Gutierrez et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)

(2014) Jian Xu et al.   BMC GENOMICS

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

(2014) Ross D Houston et al.   BMC GENOMICS

The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout

(2014) Y. Palti et al.   Molecular Ecology Resources

Development of a high density 600K SNP genotyping array for chicken

(2013) Andreas Kranis et al.   BMC GENOMICS

Comparative analysis of genetic parameters and quantitative trait loci for growth traits in Fraser strain Arctic charr (Salvelinus alpinus) reared in freshwater and brackish water environments

(2013) M. A. Chiasson et al.   JOURNAL OF ANIMAL SCIENCE

Detection of Quantitative Trait Loci (QTL) Related to Grilsing and Late Sexual Maturation in Atlantic Salmon (Salmo salar)

(2013) Alejandro P. Gutierrez et al.   MARINE BIOTECHNOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Transcriptomics of salinity tolerance capacity in Arctic charr (Salvelinus alpinus): a comparison of gene expression profiles between divergent QTL genotypes

(2013) Joseph D. Norman et al.   PHYSIOLOGICAL GENOMICS

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Genomic arrangement of salinity tolerance QTLs in salmonids: A comparative analysis of Atlantic salmon (Salmo salar) with Arctic charr (Salvelinus alpinus) and rainbow trout (Oncorhynchus mykiss)

(2012) Joseph D Norman et al.   BMC GENOMICS

An Immune-Related Gene Evolved into the Master Sex-Determining Gene in Rainbow Trout, Oncorhynchus mykiss

(2012) Ayaka Yano et al.   CURRENT BIOLOGY

Genetic divergence among broodstocks of Arctic charr Salvelinus alpinus in eastern Canada derived from the same founding populations

(2011) Craig T Blackie et al.   AQUACULTURE RESEARCH

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

(2011) Sigbjørn Lien et al.   BMC GENOMICS

Phenotypic plasticity, heterochrony and ontogenetic repatterning during juvenile development of divergent Arctic charr (Salvelinus alpinus)

(2011) K. J. PARSONS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genetic architecture of body weight, condition factor and age of sexual maturation in Icelandic Arctic charr (Salvelinus alpinus)

(2011) Eva Küttner et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Identification of genes associated with heat tolerance in Arctic charr exposed to acute thermal stress

(2011) Nicole L. Quinn et al.   PHYSIOLOGICAL GENOMICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH