Crossover-active regions of the wheat genome are distinguished by DMC1, the chromosome axis, H3K27me3, and signatures of adaptation

Mutual potentiation of plant immunity by cell-surface and intracellular receptors

(2021) Bruno Pok Man Ngou et al.   NATURE

Pattern-recognition receptors are required for NLR-mediated plant immunity

(2021) Minhang Yuan et al.   NATURE

Distal Bias of Meiotic Crossovers in Hexaploid Bread Wheat Reflects Spatio-Temporal Asymmetry of the Meiotic Program

(2021) Kim Osman et al.   Frontiers in Plant Science

Counting on Crossovers: Controlled Recombination for Plant Breeding

(2020) Ella Taagen et al.   TRENDS IN PLANT SCIENCE

The NLR-Annotator tool enables annotation of the intracellular immune receptor repertoire

(2020) Burkhard Steuernagel et al.   PLANT PHYSIOLOGY

MutS homologue 4 and MutS homologue 5 Maintain the Obligate Crossover in Wheat Despite Stepwise Gene Loss following Polyploidization

(2020) Stuart D. Desjardins et al.   PLANT PHYSIOLOGY

ASY1 acts as a dosage-dependent antagonist of telomere-led recombination and mediates crossover interference inArabidopsis

(2020) Christophe Lambing et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone H3K27 dimethylation landscapes contribute to genome stability and genetic recombination during wheat polyploidization

(2020) Yanfeng Liu et al.   PLANT JOURNAL

A haplotype-led approach to increase the precision of wheat breeding

(2020) Jemima Brinton et al.   Communications Biology

Characterizing mutagenic effects of recombination through a sequence-level genetic map

(2019) Bjarni V. Halldorsson et al.   SCIENCE

Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome

(2019) Fei He et al.   NATURE GENETICS

An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features

(2019) Beth A. Rowan et al.   GENETICS

A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization

(2019) Abdul Kader Alabdullah et al.   Frontiers in Plant Science

Inference and analysis of population-specific fine-scale recombination maps across 26 diverse human populations

(2019) Jeffrey P. Spence et al.   Science Advances

Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

(2019) Roven Rommel Fuentes et al.   PLANT JOURNAL

EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associations

(2018) Zuguang Gu et al.   BMC GENOMICS

Nucleosomes and DNA methylation shape meiotic DSB frequency inArabidopsis thalianatransposons and gene regulatory regions

(2018) Kyuha Choi et al.   GENOME RESEARCH

Epigenetic activation of meiotic recombination nearArabidopsis thalianacentromeres via loss of H3K9me2 and non-CG DNA methylation

(2018) Charles J. Underwood et al.   GENOME RESEARCH

The genetic architecture of genome-wide recombination rate variation in allopolyploid wheat revealed by nested association mapping

(2018) Katherine W. Jordan et al.   PLANT JOURNAL

Identification of ASYNAPTIC4, a component of the meiotic chromosome axis

(2018) Aurélie Chambon et al.   PLANT PHYSIOLOGY

Local Inversion Heterozygosity Alters Recombination throughout the Genome

(2018) K. Nicole Crown et al.   CURRENT BIOLOGY

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

The transcriptional landscape of polyploid wheat

(2018) R. H. Ramírez-González et al.   SCIENCE

The need for speed: compartmentalized genome evolution in filamentous phytopathogens

(2018) Lamprinos Frantzeskakis et al.   MOLECULAR PLANT PATHOLOGY

Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus

(2018) Azahara Carmen Martín et al.   Frontiers in Plant Science

High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism

(2017) Benoit Darrier et al.   GENETICS

Distribution, position and genomic characteristics of crossovers in tomato recombinant inbred lines derived from an interspecific cross betweenSolanum lycopersicumandSolanum pimpinellifolium

(2017) Sevgin Demirci et al.   PLANT JOURNAL

Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize

(2017) Yan He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism

(2017) Benoit Darrier et al.   GENETICS

De Novo Centromere Formation and Centromeric Sequence Expansion in Wheat and its Wide Hybrids

(2016) Xiang Guo et al.   PLoS Genetics

The Polycomb Group Protein Regulatory Network

(2015) Iva Mozgova et al.   Annual Review of Plant Biology

The Molecular Biology of Meiosis in Plants

(2015) Raphaël Mercier et al.   Annual Review of Plant Biology

regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests

(2015) Bernat Gel et al.   BIOINFORMATICS

DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination inArabidopsis

(2015) Nataliya E. Yelina et al.   GENES & DEVELOPMENT

DNA Crossover Motifs Associated with Epigenetic Modifications Delineate Open Chromatin Regions in Arabidopsis

(2015) Shay Shilo et al.   PLANT CELL

Crossovers are associated with mutation and biased gene conversion at recombination hotspots

(2015) Barbara Arbeithuber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recombination in diverse maize is stable, predictable, and associated with genetic load

(2015) Eli Rodgers-Melnick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Meiotic Recombination: The Essence of Heredity

(2015) Neil Hunter   Cold Spring Harbor Perspectives in Biology

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

deepTools: a flexible platform for exploring deep-sequencing data

(2014) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Running with the Red Queen: the role of biotic conflicts in evolution

(2014) M. A. Brockhurst et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ancient hybridizations among the ancestral genomes of bread wheat

(2014) T. Marcussen et al.   SCIENCE

Structural and functional partitioning of bread wheat chromosome 3B

(2014) F. Choulet et al.   SCIENCE

Genomic signatures of selection at linked sites: unifying the disparity among species

(2013) Asher D. Cutter et al.   NATURE REVIEWS GENETICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Spatiotemporal Asymmetry of the Meiotic Program Underlies the Predominantly Distal Distribution of Meiotic Crossovers in Barley

(2012) James D. Higgins et al.   PLANT CELL

Inter-Homolog Crossing-Over and Synapsis in Arabidopsis Meiosis Are Dependent on the Chromosome Axis Protein AtASY3

(2012) Maheen Ferdous et al.   PLoS Genetics

PeakRanger: A cloud-enabled peak caller for ChIP-seq data

(2011) Xin Feng et al.   BMC BIOINFORMATICS

Comprehensive, Fine-Scale Dissection of Homologous Recombination Outcomes at a Hot Spot in Mouse Meiosis

(2010) Francesca Cole et al.   MOLECULAR CELL

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

Detailed Recombination Studies Along Chromosome 3B Provide New Insights on Crossover Distribution in Wheat (Triticum aestivum L.)

(2008) C. Saintenac et al.   GENETICS