A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization

Gene co-expression network analysis identifies trait-related modules in Arabidopsis thaliana

(2019) Wei Liu et al.   PLANTA

Reducing MSH4 copy number prevents meiotic crossovers between non-homologous chromosomes in Brassica napus

(2019) Adrián Gonzalo et al.   Nature Communications

A DP-like transcription factor protein interacts with E2fl1 to regulate meiosis in Tetrahymena thermophila

(2018) Jing Zhang et al.   CELL CYCLE

A meiotic XPF–ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation

(2018) Arnaud De Muyt et al.   GENES & DEVELOPMENT

NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples

(2018) Hua Yu et al.   PLoS One

Magnesium Increases Homoeologous Crossover Frequency During Meiosis in ZIP4 (Ph1 Gene) Mutant Wheat-Wild Relative Hybrids

(2018) María-Dolores Rey et al.   Frontiers in Plant Science

A role for the transcription factor Mca1 in activating the meiosis-specific copper transporter Mfc1

(2018) Jude Beaudoin et al.   PLoS One

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

The transcriptional landscape of polyploid wheat

(2018) R. H. Ramírez-González et al.   SCIENCE

Manipulation of crossover frequency and distribution for plant breeding

(2018) A. Blary et al.   THEORETICAL AND APPLIED GENETICS

Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus

(2018) Azahara Carmen Martín et al.   Frontiers in Plant Science

Co-expression Gene Network Analysis and Functional Module Identification in Bamboo Growth and Development

(2018) Xuelian Ma et al.   Frontiers in Genetics

Exploiting the ZIP4 homologue within the wheat Ph1 locus has identified two lines exhibiting homoeologous crossover in wheat-wild relative hybrids

(2017) María-Dolores Rey et al.   MOLECULAR BREEDING

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

(2017) Ming-Cheng Luo et al.   NATURE

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

(2017) Patrick P. Edger et al.   PLANT CELL

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

(2017) Jamie Waese et al.   PLANT CELL

Unleashing meiotic crossovers in hybrid plants

(2017) Joiselle Blanche Fernandes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uncovering hidden variation in polyploid wheat

(2017) Ksenia V. Krasileva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication

(2017) Raz Avni et al.   SCIENCE

RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response

(2017) Arjun Krishnan et al.   Frontiers in Plant Science

Meiotic recombination and genome evolution in plants

(2016) Cathy Melamed-Bessudo et al.   CURRENT OPINION IN PLANT BIOLOGY

Mammalian Meiotic Recombination: A Toolbox for Genome Evolution

(2016) Laia Capilla et al.   CYTOGENETIC AND GENOME RESEARCH

Meiotic Centromere Coupling and Pairing Function by Two Separate Mechanisms in Saccharomyces cerevisiae

(2016) Emily L. Kurdzo et al.   GENETICS

Ubiquitination-mediated degradation of cell cycle-related proteins by F-box proteins

(2016) Nana Zheng et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Functional Roles of Acetylated Histone Marks at Mouse Meiotic Recombination Hot Spots

(2016) Irina V. Getun et al.   MOLECULAR AND CELLULAR BIOLOGY

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

H2B ubiquitination regulates meiotic recombination by promoting chromatin relaxation

(2016) Zhiliang Xu et al.   NUCLEIC ACIDS RESEARCH

expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform

(2016) Philippa Borrill et al.   PLANT PHYSIOLOGY

A Predictive Coexpression Network Identifies Novel Genes Controlling the Seed-to-Seedling Phase Transition inArabidopsis thaliana

(2016) Anderson Tadeu Silva et al.   PLANT PHYSIOLOGY

Comprehensive analysis of histone post-translational modifications in mouse and human male germ cells

(2016) Lacey J. Luense et al.   Epigenetics & Chromatin

Pan- and core- network analysis of co-expression genes in a model plant

(2016) Fei He et al.   Scientific Reports

Meiotic Centromere Coupling and Pairing Function by Two Separate Mechanisms in Saccharomyces cerevisiae

(2016) Emily L. Kurdzo et al.   GENETICS

The Molecular Biology of Meiosis in Plants

(2015) Raphaël Mercier et al.   Annual Review of Plant Biology

Phosphorylation of Sae2 Mediates Forkhead-associated (FHA) Domain-specific Interaction and Regulates Its DNA Repair Function

(2015) Jason Liang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mitotic lifecycle of chromosomal 3xHMG-box proteins and the role of their N-terminal domain in the association with rDNA loci and proteolysis

(2015) Martin Antosch et al.   NEW PHYTOLOGIST

A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds

(2015) Maria Cecília D. Costa et al.   PLANTA

Recombination, Pairing, and Synapsis of Homologs during Meiosis

(2015) Denise Zickler et al.   Cold Spring Harbor Perspectives in Biology

H4K44 Acetylation Facilitates Chromatin Accessibility during Meiosis

(2015) Jialei Hu et al.   Cell Reports

FastRFunctions for Robust Correlations and Hierarchical Clustering

(2015) Peter Langfelder et al.   Journal of Statistical Software

Arabidopsis PTD Is Required for Type I Crossover Formation and Affects Recombination Frequency in Two Different Chromosomal Regions

(2014) Pingli Lu et al.   Journal of Genetics and Genomics

Ten Years of Gene Discovery for Meiotic Event Control in Rice

(2014) Qiong Luo et al.   Journal of Genetics and Genomics

Meiotic Gene Evolution: Can You Teach a New Dog New Tricks?

(2014) Andrew H. Lloyd et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient hybridizations among the ancestral genomes of bread wheat

(2014) T. Marcussen et al.   SCIENCE

Structural and functional partitioning of bread wheat chromosome 3B

(2014) F. Choulet et al.   SCIENCE

Meiosis and Its Deviations in Polyploid Animals

(2013) P. Stenberg et al.   CYTOGENETIC AND GENOME RESEARCH

Comparative Transcriptomics of Early Meiosis in Arabidopsis and Maize

(2013) Stefanie Dukowic-Schulze et al.   Journal of Genetics and Genomics

Draft genome of the wheat A-genome progenitor Triticum urartu

(2013) Hong-Qing Ling et al.   NATURE

Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics

(2013) Hiroaki Sakai et al.   PLANT AND CELL PHYSIOLOGY

Replication Protein A2c Coupled with Replication Protein A1c Regulates Crossover Formation during Meiosis in Rice

(2013) X. Li et al.   PLANT CELL

The dynamics of histone H3 modifications is species-specific in plant meiosis

(2013) Cecilia Oliver et al.   PLANTA

A Mutation in the FHA Domain of Coprinus cinereus Nbs1 Leads to Spo11-Independent Meiotic Recombination and Chromosome Segregation

(2013) K. Nicole Crown et al.   G3-Genes Genomes Genetics

Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat

(2012) Andreas W Schreiber et al.   BMC GENOMICS

ZIP4 in homologous chromosome synapsis and crossover formation in rice meiosis

(2012) Y. Shen et al.   JOURNAL OF CELL SCIENCE

Evolution of Parallel Spindles Like genes in plants and highlight of unique domain architecture#

(2011) Riccardo Aiese Cigliano et al.   BMC EVOLUTIONARY BIOLOGY

A-MYB (MYBL1) transcription factor is a master regulator of male meiosis

(2011) E. Bolcun-Filas et al.   DEVELOPMENT

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

The plant-specific family of DNA-binding proteins containing three HMG-box domains interacts with mitotic and meiotic chromosomes

(2011) Dorthe S. Pedersen et al.   NEW PHYTOLOGIST

Production of Viable Gametes without Meiosis in Maize Deficient for an ARGONAUTE Protein

(2011) Manjit Singh et al.   PLANT CELL

Comprehensive Network Analysis of Anther-Expressed Genes in Rice by the Combination of 33 Laser Microdissection and 143 Spatiotemporal Microarrays

(2011) Koichiro Aya et al.   PLoS One

Homologs of Breast Cancer Genes in Plants

(2011) Oliver Trapp et al.   Frontiers in Plant Science

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

PHS1 regulates meiotic recombination and homologous chromosome pairing by controlling the transport of RAD50 to the nucleus

(2009) A. Ronceret et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Meiosis in plants: ten years of gene discovery

(2008) R. Mercier et al.   CYTOGENETIC AND GENOME RESEARCH

TheRAD51gene family in bread wheat is highly conserved across eukaryotes, withRAD51Aupregulated during early meiosis

(2008) Kelvin H. P. Khoo et al.   FUNCTIONAL PLANT BIOLOGY

Recruitment of Saccharomyces cerevisiae Dnl4-Lif1 Complex to a Double-Strand Break Requires Interactions With Yku80 and the Xrs2 FHA Domain

(2008) P. L. Palmbos et al.   GENETICS

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

Expression and functional analysis of AtMUS81 in Arabidopsis meiosis reveals a role in the second pathway of crossing-over

(2008) James D. Higgins et al.   PLANT JOURNAL

TaASY1 promotes homologous chromosome interactions and is affected by deletion ofPh1

(2008) Scott A. Boden et al.   PLANT JOURNAL

Effective chromosome pairing requires chromatin remodeling at the onset of meiosis

(2008) I. Colas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Managing meiotic recombination in plant breeding

(2008) E WIJNKER et al.   TRENDS IN PLANT SCIENCE

Male reproductive development: gene expression profiling of maize anther and pollen ontogeny

(2008) Jiong Ma et al.   GENOME BIOLOGY