Systematic Review: The Gut Microbiome and Its Potential Clinical Application in Inflammatory Bowel Disease

Systematic review: gastric microbiota in health and disease

(2020) Mirjana Rajilic-Stojanovic et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

The microbiome and inflammatory bowel disease

(2020) Kerri L. Glassner et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels

(2020) Mohammad Tauqeer Alam et al.   Gut Pathogens

Persistent Diarrhea in Patients With Crohn’s Disease After Mucosal Healing Is Associated With Lower Diversity of the Intestinal Microbiome and Increased Dysbiosis

(2020) Karen Boland et al.   Clinical Gastroenterology and Hepatology

Bacterial Mucosa-associated Microbiome in Inflamed and Proximal Noninflamed Ileum of Patients With Crohn’s Disease

(2020) Maya Olaisen et al.   INFLAMMATORY BOWEL DISEASES

Crohn’s Disease Differentially Affects Region-Specific Composition and Aerotolerance Profiles of Mucosally Adherent Bacteria

(2020) Nur M Shahir et al.   INFLAMMATORY BOWEL DISEASES

Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease

(2020) F. J. Ryan et al.   Nature Communications

Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study

(2020) Adam G Clooney et al.   GUT

Multi-“-Omics” Profiling in Patients With Quiescent Inflammatory Bowel Disease Identifies Biomarkers Predicting Relapse

(2020) Nienke Z Borren et al.   INFLAMMATORY BOWEL DISEASES

Inflammatory Bowel Disease–Associated Changes in the Gut: Focus on Kazan Patients

(2020) Giuseppe Lo Sasso et al.   INFLAMMATORY BOWEL DISEASES

Faecal microbiota signatures of IBD and their relation to diagnosis, disease phenotype, inflammation, treatment escalation and anti-TNF response in a European Multicentre Study (IBD-Character)

(2020) S. Vatn et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Host Genetic and Gut Microbial Signatures in Familial Inflammatory Bowel Disease

(2020) Yoo Min Park et al.   Clinical and Translational Gastroenterology

Differentially Abundant Bacterial Taxa Associated with Prognostic Variables of Crohn’s Disease: Results from the IMPACT Study

(2020) Soo-kyung Park et al.   Journal of Clinical Medicine

Cytometric fingerprints of gut microbiota predict Crohn’s disease state

(2020) Peter Rubbens et al.   ISME Journal

Microbial network disturbances in relapsing refractory Crohn’s disease

(2019) Bahtiyar Yilmaz et al.   NATURE MEDICINE

Altered fecal bacterial composition correlates with disease activity in inflammatory bowel disease and the extent of IL8 induction

(2019) Farnaz Heidarian et al.   Current Research in Translational Medicine

Influence of Crohn’s disease related polymorphisms in innate immune function on ileal microbiome

(2019) Ellen Li et al.   PLoS One

Fecal microbiota dynamics and its relation with disease course in Crohn's disease

(2019) Gianluca Galazzo et al.   Journal of Crohns & Colitis

Gut mucosal virome alterations in ulcerative colitis

(2019) Tao Zuo et al.   GUT

Individualized Dynamics in the Gut Microbiota Precede Crohnʼs Disease Flares

(2019) Tzipi Braun et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

(2019) Jason Lloyd-Price et al.   NATURE

Combined Signature of the Fecal Microbiome and Plasma Metabolome in Patients with Ulcerative Colitis

(2019) Meiling Sun et al.   MEDICAL SCIENCE MONITOR

Gut microbiota contributes to the distinction between two traditional Chinese medicine syndromes of ulcerative colitis

(2019) Ya-Li Zhang et al.   WORLD JOURNAL OF GASTROENTEROLOGY

IL-13 mRNA tissue content identifies two subsets of adult ulcerative colitis patients with different clinical and mucosa-associated microbiota profiles

(2019) Alessia Butera et al.   Journal of Crohns & Colitis

Alteration of Gut Microbiota in Inflammatory Bowel Disease (IBD): Cause or Consequence? IBD Treatment Targeting the Gut Microbiome

(2019) Israr Khan et al.   Pathogens

The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific

(2019) Andrey N. Shkoporov et al.   Cell Host & Microbe

Remission in Crohn’s disease is accompanied by alterations in the gut microbiota and mucins production

(2019) Daniéla Oliveira Magro et al.   Scientific Reports

Increased abundance of proteobacteria in aggressive Crohn’s disease seven years after diagnosis

(2019) M. K. Vester-Andersen et al.   Scientific Reports

Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease

(2019) Adam G. Clooney et al.   Cell Host & Microbe

Differences in Gut Microbiota in Patients With vs Without Inflammatory Bowel Diseases: A Systematic Review

(2019) Rapat Pittayanon et al.   GASTROENTEROLOGY

Inflammation-related differences in mucosa-associated microbiota and intestinal barrier function in colonic Crohn's disease

(2018) Josie Libertucci et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Faecal microRNA as a biomarker of the activity and prognosis of inflammatory bowel diseases

(2018) Yahong Ji et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The Impact of NOD2 Variants on Fecal Microbiota in Crohn’s Disease and Controls Without Gastrointestinal Disease

(2018) Nicholas A Kennedy et al.   INFLAMMATORY BOWEL DISEASES

Comparison of the microbial community structure between inflamed and non-inflamed sites in patients with ulcerative colitis

(2018) Atsushi Hirano et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Transitional and temporal changes in the mucosal and submucosal intestinal microbiota in advanced Crohn's disease of the terminal ileum

(2018) Rodrick J. Chiodini et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Alterations of the human gut Methanobrevibacter smithii as a biomarker for inflammatory bowel diseases

(2018) Shaghayegh Baradaran Ghavami et al.   MICROBIAL PATHOGENESIS

Fecal microbial dysbiosis in Chinese patients with inflammatory bowel disease

(2018) Hai-Qin Ma et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Molecular profiling of mucosal tissue associated microbiota in patients manifesting acute exacerbations and remission stage of ulcerative colitis

(2018) Sandeep A. Walujkar et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease

(2018) Ahmed Moustafa et al.   Clinical and Translational Gastroenterology

Dynamics of metatranscription in the inflammatory bowel disease gut microbiome

(2018) Melanie Schirmer et al.   Nature Microbiology

Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction

(2018) Youlian Zhou et al.   mSystems

Prevalence of Yersinia Species in the Ileum of Crohn's Disease Patients and Controls

(2018) Guillaume Le Baut et al.   Frontiers in Cellular and Infection Microbiology

The Gut Microbiota in the Pathogenesis and Therapeutics of Inflammatory Bowel Disease

(2018) Tao Zuo et al.   Frontiers in Microbiology

Gut mucosal-associated microbiota better discloses Inflammatory Bowel Disease differential patterns than faecal microbiota

(2018) Annamaria Altomare et al.   DIGESTIVE AND LIVER DISEASE

IL23R-protective coding variant promotes beneficial bacteria and diversity in the ileal microbiome in healthy individuals without inflammatory bowel disease

(2018) Martha Zakrzewski et al.   Journal of Crohns & Colitis

Characterization of fungal dysbiosis in Japanese patients with inflammatory bowel disease

(2018) Takayuki Imai et al.   JOURNAL OF GASTROENTEROLOGY

Modulation of faecal metagenome in Crohn’s disease: Role of microRNAs as biomarkers

(2018) María Rojas-Feria et al.   WORLD JOURNAL OF GASTROENTEROLOGY

The microbiome of Crohn’s disease aphthous ulcers

(2018) Claire L. O’Brien et al.   Gut Pathogens

The prevalence and transcriptional activity of the mucosal microbiota of ulcerative colitis patients

(2018) Aina E. Fossum Moen et al.   Scientific Reports

Gut microbiome structure and metabolic activity in inflammatory bowel disease

(2018) Eric A. Franzosa et al.   Nature Microbiology

A microbial signature for Crohn's disease

(2017) Victoria Pascal et al.   GUT

Determinants of Reduced Genetic Capacity for Butyrate Synthesis by the Gut Microbiome in Crohn’s Disease and Ulcerative Colitis

(2017) Emilio J Laserna-Mendieta et al.   Journal of Crohns & Colitis

Analysis of endoscopic brush samples identified mucosa-associated dysbiosis in inflammatory bowel disease

(2017) Kyohei Nishino et al.   JOURNAL OF GASTROENTEROLOGY

Fecal biomarkers in inflammatory bowel disease

(2017) Robert N Lopez et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Gut microbiota and IBD: causation or correlation?

(2017) Josephine Ni et al.   Nature Reviews Gastroenterology & Hepatology

Partners of patients with ulcerative colitis exhibit a biologically relevant dysbiosis in fecal microbial metacommunities

(2017) Guang-Lan Chen et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Detection of enterotoxigenic Bacteroides fragilis in patients with ulcerative colitis

(2017) Samin Zamani et al.   Gut Pathogens

Alterations in the mucosa-associated fungal microbiota in patients with ulcerative colitis

(2017) Xinyun Qiu et al.   Oncotarget

A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

(2017) Andrew Brantley Hall et al.   Genome Medicine

New Frontiers in Genetics, Gut Microbiota, and Immunity: A Rosetta Stone for the Pathogenesis of Inflammatory Bowel Disease

(2017) Mingxia Zhou et al.   Biomed Research International

Dynamics of the human gut microbiome in inflammatory bowel disease

(2017) Jonas Halfvarson et al.   Nature Microbiology

Intestinal Bacteria Composition and Translocation of Bacteria in Inflammatory Bowel Disease

(2017) Spyros Vrakas et al.   PLoS One

Cross sectional evaluation of the gut-microbiome metabolome axis in an Italian cohort of IBD patients

(2017) Maria Laura Santoru et al.   Scientific Reports

It’s the song, not the singer: an exploration of holobiosis and evolutionary theory

(2016) W. Ford Doolittle et al.   BIOLOGY & PHILOSOPHY

Does the intestinal microbial community of Korean Crohn’s disease patients differ from that of western patients?

(2016) Chang Soo Eun et al.   BMC GASTROENTEROLOGY

Reduced Abundance of Butyrate-Producing Bacteria Species in the Fecal Microbial Community in Crohn's Disease

(2016) Kenichiro Takahashi et al.   DIGESTION

Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

(2016) Floris Imhann et al.   GUT

Fungal microbiota dysbiosis in IBD

(2016) Harry Sokol et al.   GUT

Antibiotic Treatment Induces Long-lasting Changes in the Fecal Microbiota that Protect Against Colitis

(2016) Naomi L. Ward et al.   INFLAMMATORY BOWEL DISEASES

Distinct Microbiotas are Associated with Ileum-Restricted and Colon-Involving Crohnʼs Disease

(2016) Timna Naftali et al.   INFLAMMATORY BOWEL DISEASES

A Single Species of Clostridium Subcluster XIVa Decreased in Ulcerative Colitis Patients

(2016) Kozue Takeshita et al.   INFLAMMATORY BOWEL DISEASES

Microbiome Survey of the Inflamed and Noninflamed Gut at Different Compartments Within the Gastrointestinal Tract of Inflammatory Bowel Disease Patients

(2016) Jessica D. Forbes et al.   INFLAMMATORY BOWEL DISEASES

The predominant site of bacterial translocation across the intestinal mucosal barrier occurs at the advancing disease margin in Crohn's disease

(2016) Rodrick J. Chiodini et al.   MICROBIOLOGY-SGM

Antibody markers in the diagnosis of inflammatory bowel disease

(2016) Keiichi Mitsuyama   WORLD JOURNAL OF GASTROENTEROLOGY

Bacteriome and Mycobiome Interactions Underscore Microbial Dysbiosis in Familial Crohn’s Disease

(2016) G. Hoarau et al.   mBio

Disease Severity and Immune Activity Relate to Distinct Interkingdom Gut Microbiome States in Ethnically Distinct Ulcerative Colitis Patients

(2016) Jordan S. Mar et al.   mBio

The fecal microbiota as a biomarker for disease activity in Crohn’s disease

(2016) Danyta. I. Tedjo et al.   Scientific Reports

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

(2015) Jason M. Norman et al.   CELL

Siblings of patients with Crohn’s disease exhibit a biologically relevant dysbiosis in mucosal microbial metacommunities

(2015) Charlotte Hedin et al.   GUT

Spatial variation of the colonic microbiota in patients with ulcerative colitis and control volunteers

(2015) A Lavelle et al.   GUT

Geographical patterns of the standing and active human gut microbiome in health and IBD

(2015) Ateequr Rehman et al.   GUT

Alterations of mucosal microbiota in the colon of patients with inflammatory bowel disease revealed by real time polymerase chain reaction amplification of 16S ribosomal ribonucleic acid

(2015) BalakrishnanS Ramakrishna et al.   INDIAN JOURNAL OF MEDICAL RESEARCH

Metagenomic Analysis of Microbiome in Colon Tissue from Subjects with Inflammatory Bowel Diseases Reveals Interplay of Viruses and Bacteria

(2015) Weiwei Wang et al.   INFLAMMATORY BOWEL DISEASES

Metagenomic Analysis of Crohnʼs Disease Patients Identifies Changes in the Virome and Microbiome Related to Disease Status and Therapy, and Detects Potential Interactions and Biomarkers

(2015) Vicente Pérez-Brocal et al.   INFLAMMATORY BOWEL DISEASES

Fungal Dysbiosis in Mucosa-associated Microbiota of Crohn’s Disease Patients

(2015) Giuseppina Liguori et al.   Journal of Crohns & Colitis

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Crohn associated microbial communities associated to colonic mucosal biopsies in patients of the western Mediterranean

(2015) Roberto Vidal et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Microbial Population Differentials between Mucosal and Submucosal Intestinal Tissues in Advanced Crohn's Disease of the Ileum

(2015) Rodrick J. Chiodini et al.   PLoS One

Determination of the discriminant score of intestinal microbiota as a biomarker of disease activity in patients with ulcerative colitis

(2014) Katsuyuki Fukuda et al.   BMC GASTROENTEROLOGY

Altered intestinal microbiota and blood T cell phenotype are shared by patients with Crohn's disease and their unaffected siblings

(2014) Charlotte R Hedin et al.   GUT

Metabolic Alterations to the Mucosal Microbiota in Inflammatory Bowel Disease

(2014) Michael Davenport et al.   INFLAMMATORY BOWEL DISEASES

Characteristics of Fecal and Mucosa-Associated Microbiota in Chinese Patients With Inflammatory Bowel Disease

(2014) Liping Chen et al.   MEDICINE

Increased Prevalence of Methanosphaera stadtmanae in Inflammatory Bowel Diseases

(2014) Pascale Blais Lecours et al.   PLoS One

Colonisation byFaecalibacterium prausnitziiand maintenance of clinical remission in patients with ulcerative colitis

(2013) E. Varela et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Clostridium leptum group bacteria abundance and diversity in the fecal microbiota of patients with inflammatory bowel disease: a case–control study in India

(2013) Jayakanthan Kabeerdoss et al.   BMC GASTROENTEROLOGY

Correlations between colonic crypt mucin chemotype, inflammatory grade andDesulfovibriospecies in ulcerative colitis

(2013) G. Lennon et al.   Colorectal Disease

A decrease of the butyrate-producing speciesRoseburia hominisandFaecalibacterium prausnitziidefines dysbiosis in patients with ulcerative colitis

(2013) Kathleen Machiels et al.   GUT

Phylogenetic Analysis of Dysbiosis in Ulcerative Colitis During Remission

(2013) Mirjana Rajilić-Stojanović et al.   INFLAMMATORY BOWEL DISEASES

Impact of Ethnicity, Geography, and Disease on the Microbiota in Health and Inflammatory Bowel Disease

(2013) Lani Prideaux et al.   INFLAMMATORY BOWEL DISEASES

Dysbiosis of Gut Fungal Microbiota is Associated With Mucosal Inflammation in Crohn’s Disease

(2013) Qiurong Li et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Crohn’s Disease May Be Differentiated Into 2 Distinct Biotypes Based on the Detection of Bacterial Genomic Sequences and Virulence Genes Within Submucosal Tissues

(2013) Rodrick J. Chiodini et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Increased Proportions of Bifidobacterium and the Lactobacillus Group and Loss of Butyrate-Producing Bacteria in Inflammatory Bowel Disease

(2013) W. Wang et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Increase of Faecal Tryptic Activity Relates to Changes in the Intestinal Microbiome: Analysis of Crohn's Disease with a Multidisciplinary Platform

(2013) Tore Midtvedt et al.   PLoS One

A Modular Organization of the Human Intestinal Mucosal Microbiota and Its Association with Inflammatory Bowel Disease

(2013) Maomeng Tong et al.   PLoS One

Fluctuations in butyrate-producing bacteria in ulcerative colitis patients of North India

(2013) Reena Kumari   WORLD JOURNAL OF GASTROENTEROLOGY

Dominant Fecal Microbiota in Newly Diagnosed Untreated Inflammatory Bowel Disease Patients

(2013) Lill Therese Thorkildsen et al.   Gastroenterology Research and Practice

Study of the Viral and Microbial Communities Associated With Crohn’s Disease: A Metagenomic Approach

(2013) Vicente Pérez-Brocal et al.   Clinical and Translational Gastroenterology

Defining a Healthy Human Gut Microbiome: Current Concepts, Future Directions, and Clinical Applications

(2012) Fredrik Bäckhed et al.   Cell Host & Microbe

The biodiversity and composition of the dominant fecal microbiota in patients with inflammatory bowel disease

(2012) Sumei Sha et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Mycobacterium avium paratuberculosis in Italy: Commensal or emerging human pathogen?

(2012) Dario Pistone et al.   DIGESTIVE AND LIVER DISEASE

Reduced Diversity and Imbalance of Fecal Microbiota in Patients with Ulcerative Colitis

(2012) Hideyuki Nemoto et al.   DIGESTIVE DISEASES AND SCIENCES

Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases

(2012) Henri Duboc et al.   GUT

Longitudinal Analyses of Gut Mucosal Microbiotas in Ulcerative Colitis in Relation to Patient Age and Disease Severity and Duration

(2012) Alemu Fite et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Multicenter analysis of fecal microbiota profiles in Japanese patients with Crohn’s disease

(2012) Akira Andoh et al.   JOURNAL OF GASTROENTEROLOGY

Decreased abundance ofFaecalibacterium prausnitziiin the gut microbiota of Crohn's disease

(2012) Takehide Fujimoto et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Patients with Inflammatory Bowel Disease Exhibit Dysregulated Responses to Microbial DNA

(2012) Naomi S. C. Hotte et al.   PLoS One

Inflammatory Bowel Diseases Phenotype, C. difficile and NOD2 Genotype Are Associated with Shifts in Human Ileum Associated Microbial Composition

(2012) Ellen Li et al.   PLoS One

Molecular-Phylogenetic Characterization of the Microbiota in Ulcerated and Non-Ulcerated Regions in the Patients with Crohn's Disease

(2012) Qiurong Li et al.   PLoS One

Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease

(2012) Alison R. Erickson et al.   PLoS One

Mucosa-associated but not luminal Escherichia coli is augmented in Crohn’s disease and ulcerative colitis

(2012) Helton Luis de Souza et al.   Gut Pathogens

Gram-negative bacteria account for main differences between faecal microbiota from patients with ulcerative colitis and healthy controls

(2012) L.K. Vigsnæs et al.   Beneficial Microbes

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Antibiotic Therapy in Inflammatory Bowel Disease: A Systematic Review and Meta-Analysis

(2011) Khurram J Khan et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Archaea as emerging organisms in complex human microbiomes

(2011) Bédis Dridi et al.   ANAEROBE

High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

(2011) Alan W Walker et al.   BMC MICROBIOLOGY

Desulfovibrio Bacterial Species Are Increased in Ulcerative Colitis

(2011) Fiachra Rowan et al.   DISEASES OF THE COLON & RECTUM

Twin Study Indicates Loss of Interaction Between Microbiota and Mucosa of Patients With Ulcerative Colitis

(2011) Patricia Lepage et al.   GASTROENTEROLOGY

Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives

(2011) M. Joossens et al.   GUT

Smokers with active Crohnʼs disease have a clinically relevant dysbiosis of the gastrointestinal microbiota*

(2011) Jane L. Benjamin et al.   INFLAMMATORY BOWEL DISEASES

Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn’s disease using terminal restriction fragment length polymorphism analysis

(2011) Akira Andoh et al.   JOURNAL OF GASTROENTEROLOGY

Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype

(2011) P. Rausch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing

(2010) Patrick Gillevet et al.   CHEMISTRY & BIODIVERSITY

A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes

(2010) Ben P. Willing et al.   GASTROENTEROLOGY

Dysbiosis of fecal microbiota in Crohnʼs disease patients as revealed by a custom phylogenetic microarray

(2010) Seungha Kang et al.   INFLAMMATORY BOWEL DISEASES

Highlighting new phylogenetic specificities of Crohnʼs disease microbiota

(2010) S. Mondot et al.   INFLAMMATORY BOWEL DISEASES

Microbiota innate stimulation is a prerequisite for T cell spontaneous proliferation and induction of experimental colitis

(2010) Ting Feng et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Transcriptional activity of the dominant gut mucosal microbiota in chronic inflammatory bowel disease patients

(2010) A. Rehman et al.   JOURNAL OF MEDICAL MICROBIOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Preferred Reporting Items for Systematic Reviews and Meta-Analyses: The PRISMA Statement

(2009) David Moher et al.   PLOS MEDICINE

Faecal microbiota profile of Crohn’s disease determined by terminal restriction fragment length polymorphism analysis

(2008) A. ANDOH et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Unstable Composition of the Fecal Microbiota in Ulcerative Colitis During Clinical Remission

(2008) Cristina Martinez et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohnʼs disease

(2008) Ben Willing et al.   INFLAMMATORY BOWEL DISEASES

Molecular analysis of the gut microbiota of identical twins with Crohn's disease

(2008) Johan Dicksved et al.   ISME Journal

Dynamics of the Mucosa-Associated Flora in Ulcerative Colitis Patients during Remission and Clinical Relapse

(2008) S. J. Ott et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Intestinal TM7 bacterial phylogenies in active inflammatory bowel disease

(2008) T. Kuehbacher et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

(2008) H. Sokol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungi and inflammatory bowel diseases: Alterations of composition and diversity

(2008) Stephan J. Ott et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Diversity of mucosa-associated microbiota in active and inactive ulcerative colitis

(2008) Jun Nishikawa et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY