Systematic review: gastric microbiota in health and disease

Helicobacter pylori infection alters gastric and tongue coating microbial communities

(2019) Yubin Zhao et al.   HELICOBACTER

Akkermansia muciniphila abundance is lower in severe obesity but its increased level after bariatric surgery is not associated with metabolic health improvement

(2019) Maria Carlota Dao et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Systematic review with meta-analysis: the worldwide prevalence of Helicobacter pylori infection

(2018) M. Zamani et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Increased Abundance of Clostridium and Fusobacterium in Gastric Microbiota of Patients with Gastric Cancer in Taiwan

(2018) Yung-Yu Hsieh et al.   Scientific Reports

Comparisons Between Bacterial Communities in Mucosa in Patients With Gastric Antrum Ulcer and a Duodenal Ulcer

(2018) Xia Chen et al.   Frontiers in Cellular and Infection Microbiology

Stunted childhood growth is associated with decompartmentalization of the gastrointestinal tract and overgrowth of oropharyngeal taxa

(2018) Pascale Vonaesch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Helicobacter pylori in human health and disease: Mechanisms for local gastric and systemic effects

(2018) Denisse Bravo et al.   WORLD JOURNAL OF GASTROENTEROLOGY

IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences

(2018) Adithya Murali et al.   Microbiome

Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

(2018) Morgane Mailhe et al.   BMC MICROBIOLOGY

Global Prevalence of Helicobacter pylori Infection: Systematic Review and Meta-Analysis

(2017) James K.Y. Hooi et al.   GASTROENTEROLOGY

Mucosal microbiome dysbiosis in gastric carcinogenesis

(2017) Olabisi Oluwabukola Coker et al.   GUT

Gastric microbial community profiling reveals a dysbiotic cancer-associated microbiota

(2017) Rui M Ferreira et al.   GUT

Gastric microbiota features associated with cancer risk factors and clinical outcomes: A pilot study in gastric cardia cancer patients from Shanxi, China

(2017) Guoqin Yu et al.   INTERNATIONAL JOURNAL OF CANCER

Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention

(2017) Ruixin Liu et al.   NATURE MEDICINE

Characterization of the Gastric Microbiota in a Pediatric Population According to Helicobacter pylori Status

(2017) Laura Llorca et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Surgically Induced Changes in Gut Microbiome and Hedonic Eating as Related to Weight Loss

(2017) Claudia P. Sanmiguel et al.   PSYCHOSOMATIC MEDICINE

Gastric microbiome of Indian patients with Helicobacter pylori infection, and their interaction networks

(2017) Anubhav Das et al.   Scientific Reports

Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use

(2017) Bryony N. Parsons et al.   PLoS Pathogens

The gastric microbiome, its interaction with Helicobacter pylori, and its potential role in the progression to stomach cancer

(2017) Jennifer M. Noto et al.   PLoS Pathogens

Molecular Characterization of the Human Stomach Microbiota in Gastric Cancer Patients

(2017) Guoqin Yu et al.   Frontiers in Cellular and Infection Microbiology

Accuracy of microbial community diversity estimated by closed- and open-reference OTUs

(2017) Robert C. Edgar   PeerJ

Alterations in Gastric Microbiota After H. Pylori Eradication and in Different Histological Stages of Gastric Carcinogenesis

(2017) Tung Hiu Li et al.   Scientific Reports

Dysbiosis of the microbiome in gastric carcinogenesis

(2017) Natalia Castaño-Rodríguez et al.   Scientific Reports

A comparison of the gut microbiome between long-term users and non-users of proton pump inhibitors

(2016) A. G. Clooney et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Effects of Proton Pump Inhibitors on the Gastric Mucosa-Associated Microbiota in Dyspeptic Patients

(2016) Francesco Paroni Sterbini et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The influence of non-steroidal anti-inflammatory drugs on the gut microbiome

(2016) M.A.M. Rogers et al.   CLINICAL MICROBIOLOGY AND INFECTION

Bacterial overgrowth and diversification of microbiota in gastric cancer

(2016) Lili Wang et al.   EUROPEAN JOURNAL OF GASTROENTEROLOGY & HEPATOLOGY

The active bacterial assemblages of the upper GI tract in individuals with and withoutHelicobacterinfection

(2016) Christian Schulz et al.   GUT

Analysis of Gastric Microbiota by Pyrosequencing: Minor Role of Bacteria Other ThanHelicobacter pyloriin the Gastric Carcinogenesis

(2016) Hyun Jin Jo et al.   HELICOBACTER

Mortality as a function of dust-haze in China: a multi-city time-series study

(2016) Jun Yang et al.   LANCET

Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation

(2016) Hilary P. Browne et al.   NATURE

Differential Changes in Gut Microbiota After Gastric Bypass and Sleeve Gastrectomy Bariatric Surgery Vary According to Diabetes Remission

(2016) Rinki Murphy et al.   OBESITY SURGERY

Functional anatomy of the colonic bioreactor: Impact of antibiotics and Saccharomyces boulardii on bacterial composition in human fecal cylinders

(2016) Alexander Swidsinski et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Gastric microbiota and predicted gene functions are altered after subtotal gastrectomy in patients with gastric cancer

(2016) Ching-Hung Tseng et al.   Scientific Reports

Different gastric microbiota compositions in two human populations with high and low gastric cancer risk in Colombia

(2016) Ines Yang et al.   Scientific Reports

Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota

(2016) Albert Palleja et al.   Genome Medicine

Postoperative Changes in Fecal Bacterial Communities and Fermentation Products in Obese Patients Undergoing Bilio-Intestinal Bypass

(2016) Vania Patrone et al.   Frontiers in Microbiology

Influence of the Biliary System on Biliary Bacteria Revealed by Bacterial Communities of the Human Biliary and Upper Digestive Tracts

(2016) Fuqiang Ye et al.   PLoS One

Microbiological profiles of sputum and gastric juice aspirates in Cystic Fibrosis patients

(2016) H. Al-momani et al.   Scientific Reports

Effects of high doses of vitamin D3 on mucosa-associated gut microbiome vary between regions of the human gastrointestinal tract

(2015) Mina Bashir et al.   EUROPEAN JOURNAL OF NUTRITION

Proton Pump Inhibitors Alter Specific Taxa in the Human Gastrointestinal Microbiome: A Crossover Trial

(2015) Daniel E. Freedberg et al.   GASTROENTEROLOGY

Proton pump inhibitors alter the composition of the gut microbiota

(2015) Matthew A Jackson et al.   GUT

Akkermansia muciniphilaand improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology

(2015) Maria Carlota Dao et al.   GUT

16S Community Profiling Identifies Proton Pump Inhibitor Related Differences in Gastric, Lung, and Oropharyngeal Microflora

(2015) Rachel Rosen et al.   JOURNAL OF PEDIATRICS

Duodenojejunal Bypass Leads to Altered Gut Microbiota and Strengthened Epithelial Barriers in Rats

(2015) Po-Jen Yang et al.   OBESITY SURGERY

Analysis of the Upper Respiratory Tract Microbiotas as the Source of the Lung and Gastric Microbiotas in Healthy Individuals

(2015) Christine M. Bassis et al.   mBio

Variations of gastric corpus microbiota are associated with early esophageal squamous cell carcinoma and squamous dysplasia

(2015) Dariush Nasrollahzadeh et al.   Scientific Reports

Effects of Surgical and Dietary Weight Loss Therapy for Obesity on Gut Microbiota Composition and Nutrient Absorption

(2015) Antje Damms-Machado et al.   Biomed Research International

The association between Helicobacter pylori infection and inflammatory bowel disease based on meta-analysis

(2015) T Rokkas et al.   United European Gastroenterology Journal

The human gastric microbiota: Is it time to rethink the pathogenesis of stomach diseases?

(2015) Gerardo Nardone et al.   United European Gastroenterology Journal

Influence of Proton-Pump Inhibitors on the Luminal Microbiota in the Gastrointestinal Tract

(2015) Ayumi Tsuda et al.   Clinical and Translational Gastroenterology

Bacterial Composition of the Human Upper Gastrointestinal Tract Microbiome Is Dynamic and Associated with Genomic Instability in a Barrett’s Esophagus Cohort

(2015) Alevtina Gall et al.   PLoS One

Akkermansia muciniphila inversely correlates with the onset of inflammation, altered adipose tissue metabolism and metabolic disorders during obesity in mice

(2015) Marc Schneeberger et al.   Scientific Reports

Review article: bacteria and pathogenesis of disease in the upper gastrointestinal tract - beyond the era ofHelicobacter pylori

(2014) M. M. Walker et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Differences in Gastric Mucosal Microbiota Profiling in Patients with Chronic Gastritis, Intestinal Metaplasia, and Gastric Cancer Using Pyrosequencing Methods

(2014) Chang Soo Eun et al.   HELICOBACTER

The Effect of PPI Use on Human Gut Microbiota and Weight Loss in Patients Undergoing Laparoscopic Roux-en-Y Gastric Bypass

(2014) Emily K. Ward et al.   OBESITY SURGERY

Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle

(2014) Xuesong He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vacuoles of Candida yeast as a specialized niche forHelicobacter pylori

(2014) Farideh Siavoshi   WORLD JOURNAL OF GASTROENTEROLOGY

Participation of microbiota in the development of gastric cancer

(2014) Li-Li Wang   WORLD JOURNAL OF GASTROENTEROLOGY

Stomach microbiota composition varies between patients with non-atrophic gastritis and patients with intestinal type of gastric cancer

(2014) Francisco Aviles-Jimenez et al.   Scientific Reports

Gut microbiota after gastric bypass in human obesity: increased richness and associations of bacterial genera with adipose tissue genes

(2013) Ling-Chun Kong et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Preferred Reporting Items for Systematic Reviews and Meta-Analyses: The PRISMA Statement

(2013) David Moher   ANNALS OF INTERNAL MEDICINE

Mucin Expression in Gastric Cancer: Reappraisal of Its Clinicopathologic and Prognostic Significance

(2013) Dae Hwan Kim et al.   ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE

Helicobacter pylori and the gastric microbiota

(2013) Lars Engstrand et al.   BEST PRACTICE & RESEARCH IN CLINICAL GASTROENTEROLOGY

Prospective assessment of the gastroesophageal microbiome in VLBW neonates

(2013) Vladana Milisavljevic et al.   BMC Pediatrics

The cultivable human oral gluten-degrading microbiome and its potential implications in coeliac disease and gluten sensitivity

(2013) M. Fernandez-Feo et al.   CLINICAL MICROBIOLOGY AND INFECTION

Gastric microbiota is altered in oesophagitis and Barrett's oesophagus and further modified by proton pump inhibitors

(2013) Itay Amir et al.   ENVIRONMENTAL MICROBIOLOGY

Immune status, antibiotic medication and pH are associated with changes in the stomach fluid microbiota

(2013) Erik C von Rosenvinge et al.   ISME Journal

Microbiological Survey of the Human Gastric Ecosystem Using Culturing and Pyrosequencing Methods

(2013) Susana Delgado et al.   MICROBIAL ECOLOGY

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

(2013) A. Everard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Co-occurrence of anaerobic bacteria in colorectal carcinomas

(2013) René L Warren et al.   Microbiome

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

(2012) Erwin G Zoetendal et al.   ISME Journal

Metagenomic sequencing of the human gut microbiome before and after bariatric surgery in obese patients with type 2 diabetes: correlation with inflammatory and metabolic parameters

(2012) J Graessler et al.   PHARMACOGENOMICS JOURNAL

Bacterial biogeography of the human digestive tract

(2011) Jennifer C. Stearns et al.   Scientific Reports

High temporal and inter-individual variation detected in the human ileal microbiota

(2010) Carien C. G. M. Booijink et al.   ENVIRONMENTAL MICROBIOLOGY

Treatment of Gastric Candidiasis in Patients with Gastric Ulcer Disease: Are Antifungal Agents Necessary?

(2010) Min Kyu Jung et al.   Gut and Liver

Inflammation and Intestinal Metaplasia of the Distal Esophagus Are Associated With Alterations in the Microbiome

(2009) Liying Yang et al.   GASTROENTEROLOGY

Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls

(2009) J. Dicksved et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Bacterial Microbiota Profiling in Gastritis without Helicobacter pylori Infection or Non-Steroidal Anti-Inflammatory Drug Use

(2009) Xiao-Xing Li et al.   PLoS One

Human gut microbiota in obesity and after gastric bypass

(2009) H. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human colonic microbiota associated with diet, obesity and weight loss

(2008) S H Duncan et al.   INTERNATIONAL JOURNAL OF OBESITY

Clinicopathological and prognostic significance of mucin phenotype in gastric cancer

(2008) Kohei Wakatsuki et al.   JOURNAL OF SURGICAL ONCOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE