Spatial variation of the colonic microbiota in patients with ulcerative colitis and control volunteers

Phylogenetic Analysis of Dysbiosis in Ulcerative Colitis During Remission

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Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota

(2013) Zhigang Zhang et al.   ISME Journal

Depth-Dependent Differences in Community Structure of the Human Colonic Microbiota in Health

(2013) Aonghus Lavelle et al.   PLoS One

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

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Microbiota of De-Novo Pediatric IBD: Increased Faecalibacterium Prausnitzii and Reduced Bacterial Diversity in Crohn's But Not in Ulcerative Colitis

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Gut microbiota composition correlates with diet and health in the elderly

(2012) Marcus J. Claesson et al.   NATURE

Gram-negative bacteria account for main differences between faecal microbiota from patients with ulcerative colitis and healthy controls

(2012) L.K. Vigsnæs et al.   Beneficial Microbes

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

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Integrative analysis of environmental sequences using MEGAN4

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Characterization of adherent-invasive Escherichia coli isolated from pediatric patients with inflammatory bowel disease

(2011) Anna Negroni et al.   INFLAMMATORY BOWEL DISEASES

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Pyrosequencing-Based Analysis of the Mucosal Microbiota in Healthy Individuals Reveals Ubiquitous Bacterial Groups and Micro-Heterogeneity

(2011) Pei-Ying Hong et al.   PLoS One

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

(2011) S. Greenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial biogeography of the human digestive tract

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Mucolytic Bacteria With Increased Prevalence in IBD Mucosa Augment In Vitro Utilization of Mucin by Other Bacteria

(2010) Chin Wen Png et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon

(2010) Yunwei Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Modelling the effect of directional spatial ecological processes at different scales

(2010) F. Guillaume Blanchet et al.   OECOLOGIA

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

(2010) M. J. Claesson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions

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Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

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KING (Kinemage, Next Generation): A versatile interactive molecular and scientific visualization program

(2009) Vincent B. Chen et al.   PROTEIN SCIENCE

Modelling directional spatial processes in ecological data

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