PacBio sequencing combined with metagenomic shotgun sequencing provides insight into the microbial diversity of zha-chili

Bacterial diversity and flavor profile of Zha-Chili, a traditional fermented food in China

(2021) Wenchao Cai et al.   FOOD RESEARCH INTERNATIONAL

Lactobacillus enshiensis sp. nov., a novel arsenic-resistant bacterium

(2020) Zhendong Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Lactobacillus zhachilii sp. nov., a lactic acid bacterium isolated from Zha-Chili

(2019) Zhendong Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Different lactic acid bacteria strains affecting the flavor profile of fermented jujube juice

(2019) Wenchao Cai et al.   JOURNAL OF FOOD PROCESSING AND PRESERVATION

Correlations among flavor compounds, lipid oxidation indices, and endogenous enzyme activity during the processing of Xinjiang dry‐cured mutton ham

(2019) Xin Guo et al.   JOURNAL OF FOOD PROCESSING AND PRESERVATION

Application of PacBio Single Molecule Real-Time (SMRT) sequencing in bacterial source tracking analysis during milk powder production

(2018) Jicheng Wang et al.   FOOD CONTROL

Effects of microbial diversity on nitrite concentration in pao cai , a naturally fermented cabbage product from China

(2018) Zhaoxia Wang et al.   FOOD MICROBIOLOGY

Dynamics and diversity of microbial community succession during fermentation of Suan yu, a Chinese traditional fermented fish, determined by high throughput sequencing

(2018) Jinhong Zang et al.   FOOD RESEARCH INTERNATIONAL

Using PacBio sequencing to investigate the bacterial microbiota of traditional Buryatian cottage cheese and comparison with Italian and Kazakhstan artisanal cheeses

(2018) Hao Jin et al.   JOURNAL OF DAIRY SCIENCE

Assessment of bacterial profiles in aged, home-made Sichuan paocai brine with varying titratable acidity by PacBio SMRT sequencing technology

(2017) Jialu Cao et al.   FOOD CONTROL

Isolation and characterization of lactic acid bacteria from fresh Chinese traditional rice wines using denaturing gradient gel electrophoresis

(2016) Jingkai Jiao et al.   FOOD SCIENCE AND BIOTECHNOLOGY

Characterization of Microbial Community during the Fermentation of Chinese Homemade paocai, a Traditional Fermented Vegetable Food

(2016) Huipeng Liang et al.   FOOD SCIENCE AND TECHNOLOGY RESEARCH

Using PacBio Long-Read High-Throughput Microbial Gene Amplicon Sequencing To Evaluate Infant Formula Safety

(2016) Yi Zheng et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Complete genome sequence of probiotic Bacillus coagulans HM-08: A potential lactic acid producer

(2016) Guoqiang Yao et al.   JOURNAL OF BIOTECHNOLOGY

Differential fecal microbiota are retained in broiler chicken lines divergently selected for fatness traits

(2016) Qiangchuan Hou et al.   Scientific Reports

Complete genome sequence of Lactobacillus helveticus H9, a probiotic strain originated from kurut

(2015) Yongfu Chen et al.   JOURNAL OF BIOTECHNOLOGY

Kimchi microflora: history, current status, and perspectives for industrial kimchi production

(2014) Ji Young Jung et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Parallel-META 2.0: Enhanced Metagenomic Data Analysis with Functional Annotation, High Performance Computing and Advanced Visualization

(2014) Xiaoquan Su et al.   PLoS One

Volatile organic compounds profile during milk fermentation by Lactobacillus pentosus and correlations between volatiles flavor and carbohydrate metabolism

(2013) D.D. Pan et al.   JOURNAL OF DAIRY SCIENCE

Microbial Succession and Metabolite Changes during Long-Term Storage of Kimchi

(2013) Sang Hyeon Jeong et al.   JOURNAL OF FOOD SCIENCE

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Data Processing System (DPS) software with experimental design, statistical analysis and data mining developed for use in entomological research

(2012) Qi-Yi Tang et al.   Insect Science

Identification and characterization of lactic acid bacteria isolated from traditional pickles in Sichuan, China

(2012) Jie Yu et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Metagenomic lactic acid bacterial diversity during Mulkimchi fermentation based on 16S rRNA sequence

(2012) Baolo Kim et al.   Journal of the Korean Society for Applied Biological Chemistry

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Transcriptome analysis of probiotic Lactobacillus casei Zhang during fermentation in soymilk

(2011) Ji-Cheng Wang et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Beneficial effects of lactic acid bacteria on human beings

(2010) Muhammad Irfan Masood et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Production of organic acids by Lactobacillus strains in three different media

(2009) Zsolt Zalán et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY