Bacterial coexistence driven by motility and spatial competition

Evolutionary Remodeling of Bacterial Motility Checkpoint Control

(2017) Bin Ni et al.   Cell Reports

Environment determines evolutionary trajectory in a constrained phenotypic space

(2017) David T Fraebel et al.   eLife

The microbiome beyond the horizon of ecological and evolutionary theory

(2017) Britt Koskella et al.   Nature Ecology & Evolution

Range expansions transition from pulled to pushed waves as growth becomes more cooperative in an experimental microbial population

(2016) Saurabh R. Gandhi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenotypic plasticity as an adaptation to a functional trade-off

(2016) Xiao Yi et al.   eLife

Counteraction of antibiotic production and degradation stabilizes microbial communities

(2015) Eric D. Kelsic et al.   NATURE

Metabolic co-dependence gives rise to collective oscillations within biofilms

(2015) Jintao Liu et al.   NATURE

The bioenergetic costs of a gene

(2015) Michael Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signaling and sensory adaptation in Escherichia coli chemoreceptors: 2015 update

(2015) John S. Parkinson et al.   TRENDS IN MICROBIOLOGY

High-throughput 3D tracking of bacteria on a standard phase contrast microscope

(2015) K.M. Taute et al.   Nature Communications

Integrating movement ecology with biodiversity research - exploring new avenues to address spatiotemporal biodiversity dynamics

(2013) Florian Jeltsch et al.   Movement Ecology

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Using Drosophila melanogaster as a Model for Genotoxic Chemical Mutational Studies with a New Program, SnpSift

(2012) Pablo Cingolani et al.   Frontiers in Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Biphasic control logic of HAMP domain signalling in the Escherichia coli serine chemoreceptor

(2011) Qin Zhou et al.   MOLECULAR MICROBIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Spatiotemporal modulation of biodiversity in a synthetic chemical-mediated ecosystem

(2009) Hao Song et al.   Nature Chemical Biology

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches

(2008) R. Stocker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA