Harnessing the Potential of Native Microbial Communities for Bioremediation of Oil Spills in the Iberian Peninsula NW Coast

Optimization of an Autochthonous Bacterial Consortium Obtained from Beach Sediments for Bioremediation of Petroleum Hydrocarbons

(2021) Rafaela Perdigão et al.   Water

The Link Between the Ecology of the Prokaryotic Rare Biosphere and Its Biotechnological Potential

(2020) Francisco Pascoal et al.   Frontiers in Microbiology

Effects of marine oil pollution on microbial diversity in coastal waters and stimulating indigenous microorganism bioremediation with nutrients

(2020) Qingguo Chen et al.   Regional Studies in Marine Science

Oil-Spill Triggered Shift in Indigenous Microbial Structure and Functional Dynamics in Different Marine Environmental Matrices

(2019) C. S. Neethu et al.   Scientific Reports

Comparative metagenomics and functional profiling of crude oil-polluted soils in Bodo West Community, Ogoni, with other sites of varying pollution history

(2019) Chioma Blaise Chikere et al.   ANNALS OF MICROBIOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Toward understanding the origin and evolution of cellular organisms

(2019) Minoru Kanehisa   PROTEIN SCIENCE

A succession of marine bacterial communities in batch reactor experiments during the degradation of five different petroleum types

(2019) Daniel Cerqueda-García et al.   MARINE POLLUTION BULLETIN

Biodegradation of n-alkanes on oil–seawater interfaces at different temperatures and microbial communities associated with the degradation

(2018) Synnøve Lofthus et al.   BIODEGRADATION

Biostimulation and bioaugmentation of native microbial community accelerated bioremediation of oil refinery sludge

(2018) Ajoy Roy et al.   BIORESOURCE TECHNOLOGY

Microbial community composition and PAHs removal potential of indigenous bacteria in oil contaminated sediment of Taean coast, Korea

(2018) Dong Wan Lee et al.   ENVIRONMENTAL POLLUTION

Flavobacterium naphthae sp. nov., isolated from oil-contaminated soil

(2018) Dhiraj Kumar Chaudhary et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil

(2018) Hernando P. Bacosa et al.   ISME Journal

Efficiency in hydrocarbon degradation and biosurfactant production by Joostella sp. A8 when grown in pure culture and consortia

(2018) Carmen Rizzo et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater

(2018) Deni Ribicic et al.   MARINE POLLUTION BULLETIN

Indigenous microbial communities along the NW Portuguese Coast: Potential for hydrocarbons degradation and relation with sediment contamination

(2018) Vanessa Gouveia et al.   MARINE POLLUTION BULLETIN

New approach for understanding genome variations in KEGG

(2018) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Biotechnologies for Marine Oil Spill Cleanup: Indissoluble Ties with Microorganisms

(2017) Francesca Mapelli et al.   TRENDS IN BIOTECHNOLOGY

Bioinformatic Approaches Including Predictive Metagenomic Profiling Reveal Characteristics of Bacterial Response to Petroleum Hydrocarbon Contamination in Diverse Environments

(2017) Arghya Mukherjee et al.   Scientific Reports

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

(2017) André M. Comeau et al.   mSystems

Enrichment and identification of naphthalene-degrading bacteria from the Persian Gulf

(2016) Mehdi Hassanshahian et al.   MARINE POLLUTION BULLETIN

Biodegradation of marine crude oil pollution using a salt-tolerant bacterial consortium isolated from Bohai Bay, China

(2016) xinfei Li et al.   MARINE POLLUTION BULLETIN

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

The effect of oil spills on the bacterial diversity and catabolic function in coastal sediments: a case study on the Prestige oil spill

(2015) Alejandro Acosta-González et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

The ocean sampling day consortium

(2015) Anna Kopf et al.   GigaScience

Bioremediation of petroleum hydrocarbons: catabolic genes, microbial communities, and applications

(2014) Sebastián Fuentes et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

Enhanced bioremediation of oil spills in the sea

(2014) Eliora Z Ron et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microbial transformation of the Deepwater Horizon oil spill—past, present, and future perspectives

(2014) Nikole E. Kimes et al.   Frontiers in Microbiology

Biodegradation of Crude Oil by a Newly Isolated Strain Rhodococcus sp. JZX-01

(2013) Chen Li et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Succession of Hydrocarbon-Degrading Bacteria in the Aftermath of the Deepwater Horizon Oil Spill in the Gulf of Mexico

(2013) Eric A. Dubinsky et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Potential of bioremediation for buried oil removal in beaches after an oil spill

(2013) Joana Pontes et al.   MARINE POLLUTION BULLETIN

Evaluation of autochthonous bioaugmentation and biostimulation during microcosm-simulated oil spills

(2013) M. Nikolopoulou et al.   MARINE POLLUTION BULLETIN

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Potential of the microbial community present in an unimpacted beach sediment to remediate petroleum hydrocarbons

(2012) C. Marisa R. Almeida et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Microbial Community Analysis of a Coastal Salt Marsh Affected by the Deepwater Horizon Oil Spill

(2012) Melanie J. Beazley et al.   PLoS One

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

(2011) Joel E. Kostka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes

(2010) Meenu Tyagi et al.   BIODEGRADATION

Oleibacter marinus gen. nov., sp. nov., a bacterium that degrades petroleum aliphatic hydrocarbons in a tropical marine environment

(2010) M. Teramoto et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Culturing marine bacteria - an essential prerequisite for biodiscovery

(2010) Ian Joint et al.   Microbial Biotechnology

Autochthonous bioaugmentation and its possible application to oil spills

(2009) Reia Hosokawa et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Hydrocarbon-degrading bacteria: the oil-spill clean-up crew

(2009) Rob J. W. Brooijmans et al.   Microbial Biotechnology

Biodegradation of Crude Oil by Individual Bacterial Strains and a Mixed Bacterial Consortium Isolated from Hydrocarbon Contaminated Areas

(2008) Muthuswamy Sathishkumar et al.   CLEAN-Soil Air Water

Thalassospira tepidiphila sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from seawater

(2008) Y. Kodama et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY