Comparative metagenomics and functional profiling of crude oil-polluted soils in Bodo West Community, Ogoni, with other sites of varying pollution history

Industrial wastewaters harbor a unique diversity of bacterial communities revealed by high-throughput amplicon analysis

(2018) Ramganesh Selvarajan et al.   ANNALS OF MICROBIOLOGY

Improved polycyclic aromatic hydrocarbon degradation in a crude oil by individual and a consortium of bacteria

(2018) Smita Kumari et al.   BIORESOURCE TECHNOLOGY

Metagenomic analysis of microbial community and function involved in cd-contaminated soil

(2018) Gang Feng et al.   BMC MICROBIOLOGY

Metagenomic analysis of the bacterial communities and their functional profiles in water and sediments of the Apies River, South Africa, as a function of land use

(2018) Akebe Luther King Abia et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Novel insights into freshwater hydrocarbon-rich sediments using metatranscriptomics: Opening the black box

(2018) Thomas Reid et al.   WATER RESEARCH

Genetic and Functional Diversity of Bacterial Microbiome in Soils With Long Term Impacts of Petroleum Hydrocarbons

(2018) Anna Gałązka et al.   Frontiers in Microbiology

High-throughput metagenomic analysis of petroleum-contaminated soil microbiome reveals the versatility in xenobiotic aromatics metabolism

(2017) Yun-Juan Bao et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Bioinformatic Approaches Including Predictive Metagenomic Profiling Reveal Characteristics of Bacterial Response to Petroleum Hydrocarbon Contamination in Diverse Environments

(2017) Arghya Mukherjee et al.   Scientific Reports

Biosurfactant and Degradative Enzymes Mediated Crude Oil Degradation by Bacterium Bacillus subtilis A1

(2017) Punniyakotti Parthipan et al.   Frontiers in Microbiology

Shift in microbial group during remediation by enhanced natural attenuation (RENA) of a crude oil-impacted soil: a case study of Ikarama Community, Bayelsa, Nigeria

(2017) Chioma Blaise Chikere et al.   3 Biotech

Shift in microbial group during remediation by enhanced natural attenuation (RENA) of a crude oil-impacted soil: a case study of Ikarama Community, Bayelsa, Nigeria

(2017) Chioma Blaise Chikere et al.   3 Biotech

Degradation of polynuclear aromatic hydrocarbons by two strains of Pseudomonas

(2016) Obinna C. Nwinyi et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Characterization of a phenanthrene-degrading microbial consortium enriched from petrochemical contaminated environment

(2016) Fangkui Wang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Responses of Microbial Communities to Hydrocarbon Exposures

(2016) Samantha Joye et al.   OCEANOGRAPHY

Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils

(2015) Franck O. P. Stefani et al.   PLoS One

Profile of bacterial communities in South African mine-water samples using Illumina next-generation sequencing platform

(2014) Jitendra Keshri et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Isolation and characterization of crude oil degrading bacteria from the Persian Gulf (Khorramshahr provenance)

(2014) Mehdi Hassanshahian et al.   MARINE POLLUTION BULLETIN

Insights into Biodegradation Through Depth-Resolved Microbial Community Functional and Structural Profiling of a Crude-Oil Contaminant Plume

(2014) Nicole Fahrenfeld et al.   MICROBIAL ECOLOGY

Transport in technicolor: Mapping ATP-binding cassette transporters in sea urchin embryos

(2014) Tufan Gökirmak et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill

(2014) Anthony D. Kappell et al.   Frontiers in Microbiology

Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities

(2014) Regina Lamendella et al.   Frontiers in Microbiology

Oil Contamination in Ogoniland, Niger Delta

(2013) Olof Lindén et al.   AMBIO

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling

(2013) Ryan J. Newton et al.   PLoS One

Microbial community analysis of Deepwater Horizon oil-spill impacted sites along the Gulf coast using functional and phylogenetic markers

(2013) Jessica K. Looper et al.   Environmental Science-Processes & Impacts

Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill

(2013) Nikole E. Kimes et al.   Frontiers in Microbiology

Evaluating bacterial community structures in oil collected from the sea surface and sediment in the northern Gulf of Mexico after theDeepwater Horizonoil spill

(2013) Zhanfei Liu et al.   MicrobiologyOpen

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

(2012) Nora B. Sutton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A complementary approach to identifying and assessing the remediation potential of hydrocarbonoclastic bacteria

(2012) Krishna K. Kadali et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Pyrosequencing reveals highly diverse microbial communities in microbial electrolysis cells involved in enhanced H2 production from waste activated sludge

(2012) Lu Lu et al.   WATER RESEARCH

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

(2012) Sahar Abubucker et al.   PLoS Computational Biology

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

(2011) Joel E. Kostka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution

(2011) Henrique Fragoso dos Santos et al.   PLoS One

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils

(2011) Heiko Nacke et al.   PLoS One

Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean

(2010) Liping Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community changes during bioremediation of aliphatic hydrocarbon-contaminated soil

(2010) Cécile Militon et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

(2009) Jorge Valdés et al.   BMC GENOMICS

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

(2009) Yuzhen Ye et al.   PLoS Computational Biology

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY