Bioremediation of petroleum hydrocarbons: catabolic genes, microbial communities, and applications

Genomic and Functional Analyses of the Gentisate and Protocatechuate Ring-Cleavage Pathways and Related 3-Hydroxybenzoate and 4-Hydroxybenzoate Peripheral Pathways in Burkholderia xenovorans LB400

(2013) María José Romero-Silva et al.   PLoS One

Dioxygenation of the Biphenyl Dioxygenation Product

(2012) Heike Overwin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of copper-resistant bacteria and bacterial communities from copper-polluted agricultural soils of central Chile

(2012) Fabiola Altimira et al.   BMC MICROBIOLOGY

Mycobacterium aromativorans JS19b1T degrades phenanthrene through C-1,2, C-3,4 and C-9,10 dioxygenation pathways

(2012) Jong-Su Seo et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Bacterial Metabolism of Polychlorinated Biphenyls

(2012) Dietmar H. Pieper et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Aerobic bacterial degradation of polycyclic aromatic hydrocarbons (PAHs) and its kinetic aspects

(2012) M. A. Baboshin et al.   MICROBIOLOGY

Performance comparison of benchtop high-throughput sequencing platforms

(2012) Nicholas J Loman et al.   NATURE BIOTECHNOLOGY

Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils

(2012) Etienne Yergeau et al.   PLoS One

Identification of Bacteria Utilizing Biphenyl, Benzoate, and Naphthalene in Long-Term Contaminated Soil

(2012) Ondrej Uhlik et al.   PLoS One

Comparison of the Specificities and Efficacies of Primers for Aromatic Dioxygenase Gene Analysis of Environmental Samples

(2011) Shoko Iwai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of adhesion on aerobic biodegradation and bioremediation of liquid hydrocarbons

(2011) Hassan Abbasnezhad et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genes involved in alkane degradation in the Alcanivorax hongdengensis strain A-11-3

(2011) Wanpeng Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genetic Regulations of the Biosynthesis of Microbial Surfactants: An Overview

(2011) Palashpriya Das et al.   Biotechnology & Genetic Engineering Reviews

Solvent tolerance in Gram-negative bacteria

(2011) Ana Segura et al.   CURRENT OPINION IN BIOTECHNOLOGY

The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation

(2011) A. V. Callaghan et al.   ENVIRONMENTAL MICROBIOLOGY

Oil Biodegradation and Bioremediation: A Tale of the Two Worst Spills in U.S. History

(2011) Ronald M. Atlas et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Antioxidant compounds improved PCB-degradation by Burkholderia xenovorans strain LB400

(2011) Bernardita L. Ponce et al.   ENZYME AND MICROBIAL TECHNOLOGY

Simazine application inhibits nitrification and changes the ammonia-oxidizing bacterial communities in a fertilized agricultural soil

(2011) Marcela Hernández et al.   FEMS MICROBIOLOGY ECOLOGY

Bioremediation of petroleum hydrocarbon contaminated soil: Effects of strategies and microbial community shift

(2011) Pao-Wen Grace Liu et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

(2011) Priya Narasingarao et al.   ISME Journal

The Homogentisate and Homoprotocatechuate Central Pathways Are Involved in 3- and 4-Hydroxyphenylacetate Degradation by Burkholderia xenovorans LB400

(2011) Valentina Méndez et al.   PLoS One

Soil Type-Dependent Responses to Phenanthrene as Revealed by Determining the Diversity and Abundance of Polycyclic Aromatic Hydrocarbon Ring-Hydroxylating Dioxygenase Genes by Using a Novel PCR Detection System

(2010) G.-C. Ding et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mineralization of PCBs by the genetically modified strain Cupriavidus necator JMS34 and its application for bioremediation of PCBs in soil

(2010) Juan Matías Saavedra et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Screening of Bacterial Isolates from Polluted Soils Exhibiting Catalase and Peroxidase Activity and Diversity of their Responses to Oxidative Stress

(2010) Mária Bučková et al.   CURRENT MICROBIOLOGY

Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean

(2010) Liping Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Isolation of hydrocarbon-degrading heavy-metal-resistant bacteria from crude oil-contaminated soil in central chile

(2010) V. Méndez et al.   JOURNAL OF BIOTECHNOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substrate Specificity and Structural Characteristics of the Novel Rieske Nonheme Iron Aromatic Ring-Hydroxylating Oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1

(2010) O. Kweon et al.   mBio

Microarray and Real-Time PCR Analyses of the Responses of High-Arctic Soil Bacteria to Hydrocarbon Pollution and Bioremediation Treatments

(2009) E. Yergeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Degradation of alkanes by bacteria

(2009) Fernando Rojo   ENVIRONMENTAL MICROBIOLOGY

Bioaugmentation with Pseudomonas sp. strain MHP41 promotes simazine attenuation and bacterial community changes in agricultural soils

(2009) Verónica Morgante et al.   FEMS MICROBIOLOGY ECOLOGY

Transmembrane passage of hydrophobic compounds through a protein channel wall

(2009) Elizabeth M. Hearn et al.   NATURE

Functional Gene Abundances (nahAc, alkB, xylE) in the Assessment of the Efficacy of Bioremediation

(2008) Jani M. Salminen et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Crystal Structure of Long-Chain Alkane Monooxygenase (LadA) in Complex with Coenzyme FMN: Unveiling the Long-Chain Alkane Hydroxylase

(2007) Liu Li et al.   JOURNAL OF MOLECULAR BIOLOGY