Comparative population genomic analyses of transporters within the Asgard archaeal superphylum

Isolation of an archaeon at the prokaryote–eukaryote interface

(2020) Hiroyuki Imachi et al.   NATURE

Expansion of the Transporter-Opsin-G protein-coupled receptor superfamily with five new protein families

(2020) Arturo Medrano-Soto et al.   PLoS One

Uncoupling the hydrolysis of lipid-linked oligosaccharide from the oligosaccharyl transfer reaction by point mutations in yeast oligosaccharyltransferase

(2020) Takahiro Yamasaki et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Asgard archaea capable of anaerobic hydrocarbon cycling

(2019) Kiley W. Seitz et al.   Nature Communications

Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism

(2019) Anja Spang et al.   Nature Microbiology

Crystal structure of heliorhodopsin

(2019) Wataru Shihoya et al.   NATURE

Structure and conformational plasticity of the intact Thermus thermophilus V/A-type ATPase

(2019) Long Zhou et al.   SCIENCE

An atomistic view of the YiiP structural changes upon zinc(II) binding

(2019) Davide Sala et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Translocon Declogger Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity

(2018) Can Kayatekin et al.   CELL

Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota

(2018) Yang Liu et al.   ISME Journal

Toward a mechanistic understanding of Feo-mediated ferrous iron uptake

(2018) Alexandrea E. Sestok et al.   Metallomics

Solution structure and elevator mechanism of the membrane electron transporter CcdA

(2018) Yunpeng Zhou et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases

(2018) Arturo Medrano-Soto et al.   PLoS One

RND transporters in the living world

(2018) Hiroshi Nikaido   RESEARCH IN MICROBIOLOGY

Solution structure and elevator mechanism of the membrane electron transporter CcdA

(2018) Yunpeng Zhou et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Asgard archaea do not close the debate about the universal tree of life topology

(2018) Violette Da Cunha et al.   PLoS Genetics

The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans

(2018) Benjamin J. Tully et al.   Scientific Data

Gene-based predictive models of trophic modes suggest Asgard archaea are not phagocytotic

(2018) John A. Burns et al.   Nature Ecology & Evolution

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics

(2018) Alina Pushkarev et al.   NATURE

Type M Resistance to Macrolides Is Due to a Two-Gene Efflux Transport System of the ATP-Binding Cassette (ABC) Superfamily

(2018) Francesco Iannelli et al.   Frontiers in Microbiology

Structure-Function Analysis of the Bifunctional CcsBA Heme Exporter and Cytochrome c Synthetase

(2018) Molly C. Sutherland et al.   mBio

The Membrane Attack Complex/Perforin Superfamily

(2017) Gabriel Moreno-Hagelsieb et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Asgard archaea illuminate the origin of eukaryotic cellular complexity

(2017) Katarzyna Zaremba-Niedzwiedzka et al.   NATURE

Archaea and the origin of eukaryotes

(2017) Laura Eme et al.   NATURE REVIEWS MICROBIOLOGY

Hsp70 facilitates trans-membrane transport of bacterial ADP-ribosylating toxins into the cytosol of mammalian cells

(2017) Katharina Ernst et al.   Scientific Reports

Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes

(2017) Violette Da Cunha et al.   PLoS Genetics

A Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence Data

(2017) Despoina D. Roumpeka et al.   Frontiers in Genetics

The putative drug efflux systems of the Bacillus cereus group

(2017) Karl A. Hassan et al.   PLoS One

TMCO1 Is an ER Ca 2+ Load-Activated Ca 2+ Channel

(2016) Qiao-Chu Wang et al.   CELL

Transport protein evolution deduced from analysis of sequence, topology and structure

(2016) Milton H Saier   CURRENT OPINION IN STRUCTURAL BIOLOGY

Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments

(2016) Cassandre Sara Lazar et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction

(2016) Kiley W Seitz et al.   ISME Journal

Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins

(2016) Bhaskara L. Reddy et al.   PLoS One

Lokiarchaeon is hydrogen dependent

(2016) Filipa L. Sousa et al.   Nature Microbiology

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam

(2015) Zachary Chiang et al.   BRIEFINGS IN BIOINFORMATICS

Microbial diversity—exploration of natural ecosystems and microbiomes

(2015) Sean M Gibbons et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Evidence for the involvement of two heterodisulfide reductases in the energy-conserving system ofMethanomassiliicoccus luminyensis

(2015) Lena Kröninger et al.   FEBS Journal

Presenilin-like GxGD Membrane Proteases Have Dual Roles as Proteolytic Enzymes and Ion Channels

(2015) Ivana Y. Kuo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Complex archaea that bridge the gap between prokaryotes and eukaryotes

(2015) Anja Spang et al.   NATURE

PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures

(2015) Michael A. Peabody et al.   NUCLEIC ACIDS RESEARCH

ChEBI in 2016: Improved services and an expanding collection of metabolites

(2015) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Slr2019, lipid A transporter homolog, is essential for acidic tolerance in Synechocystis sp. PCC6803

(2015) Ayumi Matsuhashi et al.   PHOTOSYNTHESIS RESEARCH

The LysE Superfamily of Transport Proteins Involved in Cell Physiology and Pathogenesis

(2015) Brian V. Tsu et al.   PLoS One

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

Extensive Identification of Bacterial Riboflavin Transporters and Their Distribution across Bacterial Species

(2015) Ana Gutiérrez-Preciado et al.   PLoS One

Holins in Bacteria, Eukaryotes, and Archaea: Multifunctional Xenologues with Potential Biotechnological and Biomedical Applications

(2014) Milton H. Saier et al.   JOURNAL OF BACTERIOLOGY

Bacterial formate hydrogenlyase complex

(2014) J. S. McDowall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

X-ray structure of a CDP-alcohol phosphatidyltransferase membrane enzyme and insights into its catalytic mechanism

(2014) Przemyslaw Nogly et al.   Nature Communications

Multiple cysteine residues are necessary for sorting and transport activity of the arsenite permease Acr3p from Saccharomyces cerevisiae

(2013) Ewa Maciaszczyk-Dziubinska et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Evolutionary relationships of ATP-Binding Cassette (ABC) uptake porters

(2013) Wei Hao Zheng et al.   BMC MICROBIOLOGY

The transporter-opsin-G protein-coupled receptor (TOG) superfamily

(2013) Daniel C. Yee et al.   FEBS Journal

Dual Mechanisms of Metabolite Acquisition by the Obligate Intracytosolic Pathogen Rickettsia prowazekii Reveal Novel Aspects of Triose Phosphate Transport

(2013) K. M. Frohlich et al.   JOURNAL OF BACTERIOLOGY

Deletion of the zupT gene for a zinc importer influences zinc pools in Cupriavidus metallidurans CH34

(2013) M. Herzberg et al.   Metallomics

An archaeal origin of eukaryotes supports only two primary domains of life

(2013) Tom A. Williams et al.   NATURE

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Newly characterized Golgi-localized family of proteins is involved in calcium and pH homeostasis in yeast and human cells

(2013) D. Demaegd et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selectivity mechanism of the mechanosensitive channel MscS revealed by probing channel subconducting states

(2013) C. D. Cox et al.   Nature Communications

Many Roles of the Bacterial Envelope Reducing Pathways

(2012) Seung-Hyun Cho et al.   ANTIOXIDANTS & REDOX SIGNALING

Membrane transport metabolons

(2012) Trevor F. Moraes et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

BioV Suite - a collection of programs for the study of transport protein evolution

(2012) Vamsee S. Reddy et al.   FEBS Journal

Fructose Degradation in the Haloarchaeon Haloferax volcanii Involves a Bacterial Type Phosphoenolpyruvate-Dependent Phosphotransferase System, Fructose-1-Phosphate Kinase, and Class II Fructose-1,6-Bisphosphate Aldolase

(2012) A. Pickl et al.   JOURNAL OF BACTERIOLOGY

GraXSR Proteins Interact with the VraFG ABC Transporter To Form a Five-Component System Required for Cationic Antimicrobial Peptide Sensing and Resistance in Staphylococcus aureus

(2011) Mélanie Falord et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins

(2011) Maksim A. Shlykov et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Functional specialization in nucleotide sugar transporters occurred through differentiation of the gene cluster EamA (DUF6) before the radiation of Viridiplantae

(2011) Åke Västermark et al.   BMC EVOLUTIONARY BIOLOGY

Tail-anchor targeting by a Get3 tetramer: the structure of an archaeal homologue

(2011) Christian JM Suloway et al.   EMBO JOURNAL

Comparative genomics and functional analysis of the NiaP family uncover nicotinate transporters from bacteria, plants, and mammals

(2011) Linda Jeanguenin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A1Ao-ATP Synthase ofMethanobrevibacter ruminantiumCouples Sodium Ions for ATP Synthesis under Physiological Conditions

(2011) Duncan G. G. McMillan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Roles of DHA2 Family Transporters in Drug Resistance and Iron Homeostasis in Acinetobacter spp.

(2011) Karl A. Hassan et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Identification of an Arabidopsis solute carrier critical for intracellular transport and inter-organ allocation of molybdate

(2011) A. Gasber et al.   PLANT BIOLOGY

The archaeal ‘TACK’ superphylum and the origin of eukaryotes

(2011) Lionel Guy et al.   TRENDS IN MICROBIOLOGY

Human Antimicrobial Peptide LL-37 Induces MefE/Mel-Mediated Macrolide Resistance in Streptococcus pneumoniae

(2010) D. Zahner et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Biochemical characterization of a novel ArsA ATPase complex fromAlkaliphilus metalliredigensQYMF

(2010) Hsueh-Liang Fu et al.   FEBS LETTERS

Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes

(2010) P. F. Egea et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Limited reversibility of transmembrane proton transfer assisting transmembrane electron transfer in a dihaem-containing succinate:quinone oxidoreductase

(2009) M. Gregor Madej et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Nitrite Transport Activity of the ABC-Type Cyanate Transporter of the Cyanobacterium Synechococcus elongatus

(2009) S.-i. Maeda et al.   JOURNAL OF BACTERIOLOGY

Membrane Porters of ATP-Binding Cassette Transport Systems Are Polyphyletic

(2009) Bin Wang et al.   JOURNAL OF MEMBRANE BIOLOGY

The organisation of proton motive and non-proton motive redox loops in prokaryotic respiratory systems

(2008) Jörg Simon et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation

(2008) Stephen W. Ragsdale et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

The Major Facilitator Superfamily-Type Transporter YmfE and the Multidrug-Efflux Activator Mta Mediate Bacillibactin Secretion in Bacillus subtilis

(2008) M. Miethke et al.   JOURNAL OF BACTERIOLOGY

The CCG-domain-containing subunit SdhE of succinate:quinone oxidoreductase from Sulfolobus solfataricus P2 binds a [4Fe–4S] cluster

(2008) Nils Hamann et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Biosynthesis and IroC-dependent export of the siderophore salmochelin are essential for virulence of Salmonella enterica serovar Typhimurium

(2008) Marie-Laure V. Crouch et al.   MOLECULAR MICROBIOLOGY

Interdependence of two NarK domains in a fused nitrate/nitrite transporter

(2008) Alan D. Goddard et al.   MOLECULAR MICROBIOLOGY

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY

Structures of SRP54 and SRP19, the Two Proteins that Organize the Ribonucleic Core of the Signal Recognition Particle from Pyrococcus furiosus

(2008) Pascal F. Egea et al.   PLoS One

Ion binding and selectivity of the rotor ring of the Na+-transporting V-ATPase

(2008) T. Murata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The archaebacterial origin of eukaryotes

(2008) C. J. Cox et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA